 |
PDBsum entry 5f9h
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 5f9h calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5f9h
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
30 pores,
coloured by radius |
|
20 pores,
coloured by radius
|
20 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.92 |
2.30 |
26.1 |
-2.82 |
-0.79 |
28.3 |
76 |
|
3 |
3 |
4 |
1 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
2.32 |
2.70 |
33.1 |
-2.15 |
-0.70 |
26.7 |
79 |
4 |
2 |
1 |
0 |
0 |
0 |
0 |
U 4 J A 5 J U 6 J A 14 J U 15 J A 16 J U 17 J U
18 J U 20 J
|
|
3 |
 |
3.26 |
3.26 |
34.4 |
-1.59 |
-0.72 |
19.6 |
76 |
4 |
2 |
0 |
0 |
0 |
1 |
0 |
U 4 F A 5 F U 6 F A 7 F A 8 F U 9 F A 10 F G 11 F
G 13 F A 14 F U 15 F A 16 F
|
|
4 |
 |
1.80 |
1.93 |
40.3 |
-1.43 |
-0.38 |
22.6 |
83 |
6 |
4 |
3 |
2 |
2 |
0 |
0 |
A 14 J U 15 J A 16 J U 17 J U 18 J
|
|
5 |
 |
2.90 |
3.16 |
50.2 |
-2.76 |
-0.54 |
34.0 |
74 |
10 |
1 |
0 |
0 |
0 |
2 |
0 |
A 2 L U 4 L A 5 L U 6 L A 7 L A 8 L U 9 L G 11 L
G 13 L A 14 L U 15 L A 16 L U 18 L A 19 L U 20 L
A 21 L U 22 L GTP 101 L
|
|
6 |
 |
1.25 |
2.32 |
61.8 |
-1.94 |
-0.51 |
22.5 |
74 |
8 |
4 |
3 |
3 |
2 |
1 |
1 |
|
|
7 |
 |
1.27 |
1.56 |
66.8 |
-2.12 |
-0.60 |
23.6 |
74 |
7 |
6 |
4 |
1 |
3 |
1 |
1 |
|
|
8 |
 |
1.46 |
2.08 |
69.5 |
-1.76 |
-0.44 |
20.4 |
78 |
7 |
5 |
6 |
3 |
3 |
1 |
1 |
A 7 F A 8 F U 9 F A 10 F
|
|
9 |
 |
1.40 |
2.17 |
70.1 |
-1.62 |
-0.37 |
18.4 |
79 |
8 |
3 |
6 |
4 |
2 |
1 |
1 |
A 7 F A 8 F U 9 F A 10 F
|
|
10 |
 |
1.50 |
2.44 |
78.9 |
-1.70 |
-0.69 |
18.6 |
86 |
6 |
7 |
7 |
4 |
1 |
0 |
0 |
A 5 B U 6 B A 7 B A 8 B U 9 B G 11 B G 13 B A 14
B U 9 F A 10 F
|
|
11 |
 |
1.80 |
1.77 |
84.2 |
-2.25 |
-0.51 |
24.0 |
75 |
8 |
4 |
4 |
1 |
3 |
4 |
0 |
MG 1002 K
|
|
12 |
|
1.48 |
2.29 |
108.7 |
-1.66 |
-0.40 |
21.7 |
77 |
13 |
8 |
6 |
6 |
5 |
1 |
1 |
A 7 F A 8 F A 16 F U 17 F U 18 F A 19 F U 20 F
|
|
13 |
|
2.92 |
3.03 |
112.4 |
-2.26 |
-0.50 |
27.8 |
78 |
14 |
7 |
2 |
1 |
1 |
5 |
0 |
U 4 H A 5 H U 6 H A 14 H U 15 H A 16 H U 18 H A
19 H U 20 H A 21 H U 22 H GTP 101 H
|
|
14 |
|
1.76 |
1.78 |
134.1 |
-2.24 |
-0.47 |
24.4 |
75 |
11 |
7 |
6 |
3 |
3 |
5 |
1 |
A 3 H A 14 H U 15 H
|
|
15 |
|
2.06 |
2.36 |
155.7 |
-2.03 |
-0.46 |
26.0 |
77 |
16 |
13 |
8 |
7 |
3 |
4 |
0 |
|
|
16 |
|
1.74 |
1.88 |
161.9 |
-1.79 |
-0.37 |
23.9 |
76 |
15 |
9 |
8 |
8 |
3 |
5 |
0 |
|
|
17 |
|
1.18 |
1.46 |
183.7 |
-1.23 |
-0.32 |
21.0 |
78 |
17 |
9 |
3 |
11 |
6 |
4 |
0 |
A 2 F A 16 F U 17 F U 18 F A 19 F U 22 F U 23 F C
24 F GTP 101 F U 22 J
|
|
18 |
|
1.23 |
1.54 |
201.5 |
-1.57 |
-0.42 |
23.5 |
78 |
20 |
10 |
4 |
6 |
5 |
4 |
0 |
A 2 F U 4 F A 5 F U 6 F A 7 F A 8 F U 9 F A 10 F
G 11 F G 13 F U 15 F A 16 F U 17 F U 18 F U 20 F
A 21 F U 22 F U 23 F C 24 F GTP 101 F A 14 J U 15
J A 16 J U 17 J U 18 J A 19 J U 22 J
|
|
19 |
|
1.11 |
1.25 |
216.1 |
-2.12 |
-0.48 |
26.8 |
80 |
25 |
14 |
14 |
12 |
2 |
6 |
0 |
|
 |
20 |
|
1.79 |
2.06 |
224.1 |
-1.94 |
-0.36 |
25.1 |
77 |
21 |
12 |
10 |
10 |
3 |
6 |
1 |
A 3 H A 14 H U 15 H
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program