PDBsum entry 5f1z

Tunnel analysis for: 5f1z calculated with

MOLE 2.0

PDB id

5f1z

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.17

1.30

21.7

-1.28

-0.04

10.3

77

3

2

6

3

3

3

1

2

1.20

1.28

22.7

-1.22

-0.11

9.6

77

3

2

6

3

5

3

1

3

1.18

1.29

28.0

-1.64

-0.22

15.3

79

3

3

6

3

3

1

1

4

1.18

1.29

29.0

-1.65

-0.27

15.2

79

3

3

6

3

5

1

1

5

1.54

1.54

15.7

-1.08

-0.61

14.9

81

1

2

2

1

2

1

0

6

1.52

1.52

16.3

-1.04

-0.51

12.8

78

1

1

2

2

3

1

0

7

1.52

1.52

17.3

-0.99

-0.59

14.1

83

2

2

2

2

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.