PDBsum entry 5eyb Go to PDB code:  Tunnel analysis for: 5eyb calculated with MOLE 2.0 PDB id 5eyb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.36 28.0 -1.75 -0.39 18.3 73 3 1 2 0 2 1 0  DA 6 E DA 10 E DC 16 F DT 17 F DT 18 F DC 20 F 2 1.28 1.35 29.9 -1.93 -0.41 19.8 82 4 1 2 0 1 0 0  DA 6 E DA 10 E DA 11 E DC 16 F DT 17 F DT 18 F DC 20 F 3 1.76 1.76 15.3 -0.77 -0.66 10.0 66 2 0 0 0 0 0 1  DA 5 C DA 6 C DG 7 C DT 23 D DT 24 D 4 1.76 1.76 16.6 -0.64 -0.51 9.7 88 1 0 0 1 0 0 0  DA 5 C DA 6 C DG 7 C DT 23 D DT 24 D DT 25 D DA 26 D 5 1.14 1.14 17.1 -1.12 -0.72 12.8 72 1 0 0 0 0 0 0  DA 5 C DA 6 C DG 7 C DG 8 C DT 9 C DT 22 D DT 23 D DT 24 D 6 1.60 1.60 18.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DT 2 C DA 3 C DA 4 C DA 5 C DA 6 C DT 23 D DT 24 D DT 25 D DA 26 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.