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PDBsum entry 5es4
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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5es4 calculated with MOLE 2.0 PDB id
5es4
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.79 2.02 51.0 -0.63 -0.42 14.0 80 5 2 4 5 0 0 2  
2 1.25 1.72 95.5 -1.89 -0.47 21.7 81 9 7 5 6 1 4 0  BMA 3 S MAN 4 S
3 1.78 2.02 101.8 -1.29 -0.38 19.3 79 8 8 6 8 2 1 3  
4 2.10 4.90 133.4 -2.41 -0.57 27.6 80 12 9 6 2 2 2 0  
5 1.87 2.01 158.8 -1.65 -0.26 21.1 82 14 10 11 10 3 4 1  
6 2.14 5.44 162.6 -2.00 -0.37 22.6 81 15 15 14 9 2 4 0  
7 2.07 2.39 162.2 -1.22 -0.20 17.1 76 12 11 9 9 6 10 0  
8 1.79 1.97 171.3 -1.49 -0.21 19.3 76 14 11 10 10 5 5 1  
9 1.67 1.86 174.0 -1.08 -0.48 12.6 82 10 8 15 11 3 5 1  NAG 1 U NAG 2 U BMA 3 U MAN 5 U
10 2.09 2.37 187.1 -1.72 -0.38 20.7 83 16 11 15 10 5 9 0  
11 2.90 3.01 199.9 -1.45 -0.23 18.6 76 15 15 12 10 6 10 2  
12 1.24 1.76 214.6 -1.23 -0.21 16.3 80 15 10 16 18 4 6 2  
13 1.63 1.86 218.9 -1.18 -0.32 13.0 82 12 6 19 11 10 6 0  NAG 3232 B NAG 2 L BMA 3 L NAG 2 U BMA 3 U MAN 4 U
14 2.76 2.90 228.1 -1.10 -0.27 15.0 78 17 15 18 15 6 8 1  BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
15 1.73 3.35 249.5 -1.28 -0.44 15.2 85 15 8 18 15 3 5 0  NAG 3042 A NAG 1 I NAG 2 I BMA 3 I MAN 4 I MAN 5
I NAG 1 U NAG 2 U BMA 3 U MAN 5 U
16 1.68 1.86 245.0 -1.33 -0.40 17.0 83 14 19 24 18 4 9 1  BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
17 2.81 2.93 261.7 -1.46 -0.41 16.1 81 13 18 22 14 5 10 0  NAG 2 J BMA 3 J MAN 4 J MAN 5 J MAN 6 J BMA 3 Q M
AN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
18 3.33 3.43 256.6 -1.36 -0.35 17.4 83 21 17 25 17 5 8 1  BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
19 2.13 2.08 261.1 -1.07 -0.28 15.5 80 20 17 22 20 6 7 3  BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
20 2.40 2.40 282.8 -1.17 -0.35 14.5 81 14 19 20 18 6 9 0  NAG 3232 H BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4
Y MAN 5 Y
21 1.34 1.26 283.1 -1.67 -0.44 19.2 81 23 22 21 16 5 9 0  BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
22 2.96 5.30 290.1 -1.67 -0.45 18.4 85 17 20 29 16 4 10 0  NAG 2 J BMA 3 J MAN 4 J MAN 5 J MAN 6 J BMA 3 Q M
AN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
23 2.06 2.01 294.7 -1.34 -0.39 15.7 82 16 20 26 19 5 9 2  NAG 2 J BMA 3 J MAN 4 J MAN 5 J MAN 6 J BMA 3 Q M
AN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
24 1.70 1.73 310.0 -1.43 -0.38 17.6 85 19 20 30 19 7 10 0  NAG 3232 B BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
25 1.34 1.33 311.5 -1.81 -0.47 20.7 85 27 24 28 18 4 9 0  BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
26 2.41 2.43 311.2 -1.38 -0.41 16.6 85 18 21 27 20 5 9 0  NAG 3232 H BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
27 2.08 2.02 315.7 -1.11 -0.35 14.7 82 17 21 24 23 6 8 2  NAG 3232 H BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
28 1.37 1.38 316.0 -1.56 -0.42 19.1 82 26 24 25 21 6 8 2  BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
29 1.94 2.91 326.1 -1.43 -0.39 17.8 85 20 20 27 23 4 9 0  NAG 3042 A NAG 1 I NAG 2 I BMA 3 I MAN 4 I MAN 5
I BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y
30 1.68 2.97 330.6 -1.12 -0.32 15.8 82 19 20 24 26 5 8 2  NAG 3042 A NAG 1 I NAG 2 I BMA 3 I MAN 4 I MAN 5
I BMA 3 Q MAN 4 Q MAN 5 Q MAN 5 U MAN 4 Y

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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