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PDBsum entry 5erp

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protein ligands metals Protein-protein interface(s) links
Cell adhesion PDB id
5erp

 

 

 

 

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Contents
Protein chains
443 a.a.
Ligands
NAG-NAG-BMA-MAN ×3
MAN ×8
NAG ×3
SO4 ×2
EDO ×5
Metals
_CA ×21
Waters ×111
PDB id:
5erp
Name: Cell adhesion
Title: Crystal structure of human desmocollin-2 ectodomain fragment ec2-5
Structure: Desmocollin-2. Chain: a, b. Fragment: unp residues 236-680. Synonym: cadherin family member 2,desmocollin-3,desmosomal glycoprotein ii,desmosomal glycoprotein iii. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: dsc2, cdhf2, dsc3. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hek293
Resolution:
2.70Å     R-factor:   0.225     R-free:   0.262
Authors: O.J.Harrison,J.Brasch,L.Shapiro
Key ref: O.J.Harrison et al. (2016). Structural basis of adhesive binding by desmocollins and desmogleins. Proc Natl Acad Sci U S A, 113, 7160-7165. PubMed id: 27298358 DOI: 10.1073/pnas.1606272113
Date:
14-Nov-15     Release date:   15-Jun-16    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q02487  (DSC2_HUMAN) -  Desmocollin-2 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
901 a.a.
443 a.a.
Key:    PfamA domain  Secondary structure

 

 
DOI no: 10.1073/pnas.1606272113 Proc Natl Acad Sci U S A 113:7160-7165 (2016)
PubMed id: 27298358  
 
 
Structural basis of adhesive binding by desmocollins and desmogleins.
O.J.Harrison, J.Brasch, G.Lasso, P.S.Katsamba, G.Ahlsen, B.Honig, L.Shapiro.
 
  ABSTRACT  
 
Desmosomes are intercellular adhesive junctions that impart strength to vertebrate tissues. Their dense, ordered intercellular attachments are formed by desmogleins (Dsgs) and desmocollins (Dscs), but the nature of trans-cellular interactions between these specialized cadherins is unclear. Here, using solution biophysics and coated-bead aggregation experiments, we demonstrate family-wise heterophilic specificity: All Dsgs form adhesive dimers with all Dscs, with affinities characteristic of each Dsg:Dsc pair. Crystal structures of ectodomains from Dsg2 and Dsg3 and from Dsc1 and Dsc2 show binding through a strand-swap mechanism similar to that of homophilic classical cadherins. However, conserved charged amino acids inhibit Dsg:Dsg and Dsc:Dsc interactions by same-charge repulsion and promote heterophilic Dsg:Dsc interactions through opposite-charge attraction. These findings show that Dsg:Dsc heterodimers represent the fundamental adhesive unit of desmosomes and provide a structural framework for understanding desmosome assembly.
 

 

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