PDBsum entry 5eod Go to PDB code:  Tunnel analysis for: 5eod calculated with MOLE 2.0 PDB id 5eod Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.35 36.3 -0.85 -0.60 5.2 90 3 0 7 3 0 0 0   2 1.19 1.27 41.8 -0.20 -0.27 10.9 79 4 1 6 4 0 0 2   3 1.36 1.36 16.0 -0.10 -0.34 7.1 77 1 1 1 3 1 0 0   4 1.56 1.56 16.0 -1.38 -0.38 23.4 88 3 2 0 3 0 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.