PDBsum entry 5emk Go to PDB code:  Tunnel analysis for: 5emk calculated with MOLE 2.0 PDB id 5emk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.54 36.0 -1.77 -0.52 18.4 82 3 5 4 3 0 5 1   2 1.28 1.53 36.5 -1.97 -0.60 12.4 81 4 4 6 2 0 5 0   3 1.28 1.54 38.6 -1.31 -0.44 13.5 78 3 4 3 2 2 4 0   4 1.27 1.54 39.4 -1.49 -0.45 17.2 82 3 6 4 4 0 5 0   5 1.28 1.55 51.5 -1.44 -0.40 15.6 81 5 5 6 5 0 4 1   6 1.27 1.59 56.4 -1.74 -0.42 17.4 80 5 6 7 5 1 4 0   7 1.29 1.53 75.4 -1.53 -0.51 16.8 83 7 6 6 6 0 6 2   8 2.18 2.34 32.1 -0.26 0.14 10.5 70 1 3 3 5 5 1 0  SFG 701 A 5QH 702 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.