spacer
spacer

PDBsum entry 5em7

Go to PDB code: 
Top Page protein ligands pores links
Pore analysis for: 5em7 calculated with MOLE 2.0 PDB id
5em7
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
0 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.40 2.41 31.8 0.27 -0.11 10.5 74 3 4 0 4 1 0 1  5Q4 1102 A
2 1.32 1.54 40.4 0.30 0.07 10.0 74 3 2 1 8 3 0 1  5Q4 1102 A
3 1.33 1.55 49.7 0.22 0.14 11.7 77 4 4 2 8 4 0 2  5Q4 1102 A
4 1.34 1.54 62.9 -0.81 -0.05 19.2 77 7 5 2 10 5 0 1  5Q4 1102 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer