PDBsum entry 5ek9 Go to PDB code:  Tunnel analysis for: 5ek9 calculated with MOLE 2.0 PDB id 5ek9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.37 26.7 -1.15 -0.15 15.9 80 3 0 3 5 2 0 0   2 1.36 1.66 15.5 1.27 0.52 3.0 73 1 0 2 4 3 0 1  5P4 501 A 3 1.80 1.80 17.9 1.02 0.54 5.4 67 1 1 1 3 3 1 1  5P4 501 A 4 1.35 1.64 20.0 0.86 0.46 5.1 69 1 1 1 4 3 1 1  5P4 501 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.