spacer
spacer

PDBsum entry 5ehr

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 5ehr calculated with MOLE 2.0 PDB id
5ehr
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.18 1.25 30.9 -2.26 -0.43 24.0 76 5 2 2 0 3 0 0  
2 3.28 3.99 56.2 -1.41 -0.49 20.4 89 6 6 3 6 1 0 0  
3 1.49 1.61 92.3 -2.33 -0.52 29.5 78 9 8 2 4 1 2 0  5OD 601 B
4 2.20 2.50 30.1 -1.53 -0.42 24.7 79 4 4 3 4 0 1 0  5OD 601 A
5 2.19 2.32 30.4 -1.63 -0.64 22.9 81 2 4 2 3 0 1 0  5OD 601 A
6 1.22 1.78 35.8 -1.99 -0.24 32.8 75 4 7 0 3 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer