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PDBsum entry 5eg0

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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 5eg0 calculated with MOLE 2.0 PDB id
5eg0
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.30 1.30 18.4 -0.91 -0.53 9.3 66 2 0 0 1 0 1 0  DT 30 D DT 31 D DA 9 E DA 10 E DC 11 E DT 12 E
2 1.30 1.30 20.2 -0.99 -0.65 7.9 70 1 0 0 0 0 1 0  DT 29 D DT 30 D DT 31 D DA 9 E DA 10 E DC 11 E DT
12 E DG 13 E
3 1.30 1.30 34.2 -0.43 -0.32 7.0 74 2 0 2 4 1 2 0  DT 30 D DT 31 D DA 9 E DA 10 E DC 11 E
4 1.51 1.51 15.6 -0.72 0.02 7.7 77 2 0 1 3 1 1 0  DA 8 E DA 9 E DA 10 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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