spacer
spacer

PDBsum entry 5eea

Go to PDB code: 
Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 5eea calculated with MOLE 2.0 PDB id
5eea
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.50 1.60 40.5 -0.59 -0.21 10.8 74 5 1 2 2 1 0 0  DT 2 C DT 8 D DT 9 D DC 17 D DC 5 E DC 6 E DA 7 E
DA 8 E DT 9 E DC 14 E DA 15 E
2 1.69 1.73 42.9 -0.69 -0.43 10.1 60 3 1 0 2 1 2 0  DT 2 C DT 4 C DT 6 C DT 7 C DT 8 C DT 9 C DC 14 E
DA 15 E DT 9 F DC 14 F DA 15 F
3 1.49 1.52 55.2 -1.47 -0.39 16.9 78 5 0 3 1 2 0 0  DT 6 C DT 7 C DT 8 C DT 9 C DA 10 C DT 11 C DT 12
C DG 13 C DG 2 F DA 3 F DT 9 F
4 1.37 1.37 66.4 -1.37 -0.51 20.1 79 7 1 0 1 0 0 0  DT 1 D DT 2 D DG 3 D DT 4 D DT 6 D DT 7 D DC 5 E
DC 6 E DA 7 E DA 8 E DT 9 E DA 10 E DA 11 E DA 12
E DA 13 E DC 14 E DT 4 H DG 5 H DT 6 H DA 10 I DA
11 I DA 12 I
5 1.36 1.37 75.4 -0.51 -0.37 7.9 83 4 0 5 4 0 2 0  DT 2 C DT 11 D DT 12 D DC 17 D DG 2 E DA 3 E DC 4
E DC 5 E DC 14 E DA 15 E DC 14 F
6 1.88 1.87 84.0 -1.48 -0.47 22.4 78 6 1 0 3 0 0 0  DT 2 C DT 1 D DT 2 D DG 3 D DT 4 D DT 6 D DT 7 D
DT 8 D DT 9 E DA 10 E DA 11 E DA 12 E DA 13 E DC
14 E DA 15 E DC 16 E DT 4 H DG 5 H DT 6 H DA 10 I
DA 11 I DA 12 I
7 1.49 1.58 96.9 -0.89 -0.46 14.4 81 4 1 2 3 0 0 0  DT 1 D DT 2 D DG 3 D DT 4 D DG 5 D DA 17 E DA 18
E DT 2 H DG 3 H DT 4 H DT 7 K DT 8 K DT 9 K DC 17
K DC 5 L DC 6 L DA 7 L DA 8 L DT 9 L DA 15 L DC
16 L
8 1.72 1.72 102.2 -0.96 -0.60 14.8 80 4 1 0 4 0 0 0  DT 1 D DT 2 D DG 3 D DT 4 D DG 5 D DA 17 E DA 18
E DT 2 H DG 3 H DT 4 H DT 6 K DT 7 K DT 8 K DA 7
L DA 8 L DT 9 L DA 15 L DC 16 L
9 1.40 1.41 108.8 -1.15 -0.32 20.1 80 9 2 2 4 0 0 0  DG 5 D DT 6 D DT 7 D DC 5 E DC 6 E DA 7 E DA 8 E
DT 9 E DT 2 H DT 7 K DT 8 K DT 9 K DC 17 K DC 5 L
DC 6 L DA 7 L DA 8 L DT 9 L DA 15 L DC 16 L
10 1.37 1.37 114.1 -1.39 -0.44 22.9 80 9 2 0 5 0 0 0  DG 5 D DT 6 D DT 7 D DC 5 E DC 6 E DA 7 E DA 8 E
DT 9 E DT 2 H DT 6 K DT 7 K DT 8 K DA 7 L DA 8 L
DT 9 L DA 15 L DC 16 L
11 1.40 1.40 119.7 -1.26 -0.69 14.4 90 6 0 2 1 0 0 0  DT 1 D DT 2 D DG 3 D DT 4 D DT 11 D DT 12 D DG 2
E DA 3 E DC 4 E DC 5 E DA 11 E DA 12 E DA 13 E DC
14 E DT 4 H DG 5 H DT 6 H DA 10 I DA 11 I DA 12 I
12 1.78 1.80 131.8 -1.50 -0.44 24.4 79 8 2 0 7 0 0 0  DT 2 C DG 5 D DT 6 D DT 7 D DT 8 D DT 9 E DA 15 E
DC 16 E DT 2 H DT 6 K DT 7 K DT 8 K DA 7 L DA 8 L
DT 9 L DA 15 L DC 16 L
13 1.35 1.37 143.0 -1.27 -0.62 17.2 89 11 1 3 3 0 0 0  DT 11 D DT 12 D DG 13 D DG 14 D DC 17 D DG 2 E DA
3 E DC 4 E DC 5 E DC 6 E DA 7 E DA 8 E DT 9 E DA
10 E
14 1.36 1.36 180.9 -0.78 -0.48 11.2 88 9 1 10 9 0 2 0  DT 11 D DT 12 D DG 2 E DA 3 E DC 4 E DC 5 E DC 14
I DT 6 K DT 7 K DT 8 K DA 7 L DA 8 L DT 9 L DC 14
L DA 15 L DC 16 L

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer