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PDBsum entry 5edr

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protein ligands links
Transferase/transferase inhibitor PDB id
5edr

 

 

 

 

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Contents
Protein chain
299 a.a.
Ligands
5N4
Waters ×57
PDB id:
5edr
Name: Transferase/transferase inhibitor
Title: Egfr kinase (t790m/l858r) with inhibitor compound 27: ~{n}-(1~{h}- indazol-3-yl)-7,7-dimethyl-2-(2-methylpyrazol-3-yl)-5~{h}-furo[3,4- d]pyrimidin-4-amine
Structure: Epidermal growth factor receptor. Chain: a. Synonym: proto-oncogenE C-erbb-1,receptor tyrosine-protein kinase erbb-1. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: egfr, erbb, erbb1, her1. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108
Resolution:
2.60Å     R-factor:   0.192     R-free:   0.215
Authors: C.Eigenbrot,C.Yu
Key ref: E.J.Hanan et al. (2016). 4-Aminoindazolyl-dihydrofuro[3,4-d]pyrimidines as non-covalent inhibitors of mutant epidermal growth factor receptor tyrosine kinase. Bioorg Med Chem Lett, 26, 534-539. PubMed id: 26639762 DOI: 10.1016/j.bmcl.2015.11.078
Date:
21-Oct-15     Release date:   02-Dec-15    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P00533  (EGFR_HUMAN) -  Epidermal growth factor receptor from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1210 a.a.
299 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.1  - receptor protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1016/j.bmcl.2015.11.078 Bioorg Med Chem Lett 26:534-539 (2016)
PubMed id: 26639762  
 
 
4-Aminoindazolyl-dihydrofuro[3,4-d]pyrimidines as non-covalent inhibitors of mutant epidermal growth factor receptor tyrosine kinase.
E.J.Hanan, M.Baumgardner, M.C.Bryan, Y.Chen, C.Eigenbrot, P.Fan, X.H.Gu, H.La, S.Malek, H.E.Purkey, G.Schaefer, S.Schmidt, S.Sideris, I.Yen, C.Yu, T.P.Heffron.
 
  ABSTRACT  
 
The treatment of epidermal growth factor receptor (EGFR)-driven non-small cell lung cancers with the T790M resistance mutation remains a significant unmet medical need. We report the identification of 4-aminoindazolyl-dihydrofuro[3,4-d]pyrimidines as non-covalent inhibitors of EGFR, with excellent activity against the T790M resistance double mutants and initial single activating mutants. Using an optimization strategy focused on structure-based design and improving PK properties through metabolite identification, we obtained advanced leads with high oral exposure.
 

 

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