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PDBsum entry 5e6u

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Top Page protein ligands metals Protein-protein interface(s) links
Cell adhesion PDB id
5e6u
Contents
Protein chains
583 a.a.
453 a.a.
Ligands
NAG ×3
Metals
_MG ×2
_CA ×4
_CL
Waters ×654

References listed in PDB file
Key reference
Title Leukocyte integrin αlβ2 headpiece structures: the αi domain, The pocket for the internal ligand, And concerted movements of its loops.
Authors M.Sen, T.A.Springer.
Ref. Proc Natl Acad Sci U S A, 2016, 113, 2940-2945. [DOI no: 10.1073/pnas.1601379113]
PubMed id 26936951
Abstract
High-resolution crystal structures of the headpiece of lymphocyte function-associated antigen-1 (integrin αLβ2) reveal how the αI domain interacts with its platform formed by the α-subunit β-propeller and β-subunit βI domains. The αLβ2 structures compared with αXβ2 structures show that the αI domain, tethered through its N-linker and a disulfide to a stable β-ribbon pillar near the center of the platform, can undergo remarkable pivoting and tilting motions that appear buffered by N-glycan decorations that differ between αL and αX subunits. Rerefined β2 integrin structures reveal details including pyroglutamic acid at the β2 N terminus and bending within the EGF1 domain. Allostery is relayed to the αI domain by an internal ligand that binds to a pocket at the interface between the β-propeller and βI domains. Marked differences between the αL and αX subunit β-propeller domains concentrate near the binding pocket and αI domain interfaces. Remarkably, movement in allostery in the βI domain of specificity determining loop 1 (SDL1) causes concerted movement of SDL2 and thereby tightens the binding pocket for the internal ligand.
PROCHECK
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 Headers

 

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