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PDBsum entry 5e5a
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 5e5a calculated with MOLE 2.0 PDB id
5e5a
Pores calculated on whole structure Pores calculated excluding ligands
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28 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.94 2.96 27.9 -3.12 -0.63 37.0 74 3 1 0 0 0 1 0  DA 7 I DT 8 I DT 80 I DA 83 I DC 84 I DG 205 J DC
206 J DA 207 J DT 208 J DG 209 J DT 210 J DT 282 J
2 3.05 3.18 31.7 -1.44 -0.63 14.2 92 5 0 5 1 0 0 0  DA 102 I DA 110 I DA 187 J DA 188 J DA 189 J DC
195 J
3 3.62 3.91 34.7 -1.69 -0.69 19.3 92 3 1 4 1 0 0 0  DG 18 I DT 92 I DC 195 J DC 206 J DG 280 J DG 281
J DT 282 J
4 3.03 3.18 35.9 -1.63 -0.59 18.4 93 4 0 5 1 0 0 0  DA 102 I DG 103 I DT 104 I DG 185 J DG 186 J DC
195 J DA 261 J
5 2.46 2.54 38.2 -0.90 -0.52 12.0 88 4 0 4 1 0 0 0  DG 18 I DT 90 I DT 92 I DT 93 I DA 95 I DC 195 J
DC 196 J DT 198 J DC 199 J DA 200 J
6 3.05 3.15 39.4 -2.57 -0.43 30.0 82 6 1 1 1 1 0 0  DT 38 I DA 110 I DA 111 I DT 112 I DA 113 I DC
114 I DA 124 I DC 172 J DA 173 J DA 174 J DA 176
J DG 177 J DT 178 J DG 179 J DT 180 J DT 251 J DT
252 J
7 1.83 1.83 40.5 -0.79 -0.78 6.6 91 1 0 1 0 0 0 0  DA 57 I DG 58 I DG 59 I DC 60 I DA 61 I DT 62 I
DG 135 I DC 162 J DT 236 J DT 237 J DT 238 J DT
239 J DG 240 J
8 2.61 3.21 41.0 -2.64 -0.69 32.7 81 6 2 0 0 0 0 0  DT 37 I DT 38 I DA 110 I DA 111 I DT 112 I DA 113
I DC 114 I DA 176 J DG 177 J DT 178 J DG 179 J DT
180 J DC 260 J DA 261 J
9 2.81 2.92 42.6 -0.59 -0.66 6.0 82 2 0 2 1 0 0 0  DA 51 I DT 52 I DA 57 I DG 134 I DG 135 I DC 162
J DA 163 J DG 164 J DT 239 J DG 240 J
10 2.94 2.94 47.7 -2.31 -0.61 26.9 89 4 0 1 0 0 0 0  DT 38 I DG 40 I DA 41 I DA 124 I DC 172 J DA 173
J DA 174 J DG 249 J DT 250 J DT 251 J DT 252 J DA
257 J
11 1.74 1.74 50.3 -1.03 -0.80 8.6 89 4 0 5 1 0 0 0  DG 46 I DC 47 I DT 48 I DA 51 I DT 52 I DT 123 I
DA 124 I DG 164 J DT 239 J DG 240 J
12 2.44 2.55 53.4 -1.46 -0.54 18.7 82 5 1 3 2 0 0 0  DG 18 I DC 89 I DT 90 I DT 92 I DT 93 I DT 198 J
DC 199 J DA 200 J DC 206 J DG 280 J DG 281 J DT
282 J
13 2.60 3.21 53.7 -1.87 -0.78 23.3 81 5 2 1 0 0 0 0  DT 37 I DT 38 I DG 40 I DA 41 I DA 113 I DC 114 I
DA 174 J DG 249 J DT 250 J DT 251 J DT 252 J DA
257 J DC 260 J DA 261 J
14 1.77 1.77 54.3 -0.79 -0.81 6.7 97 3 0 4 0 0 0 0  DG 46 I DC 47 I DT 48 I DA 57 I DT 123 I DA 124 I
DG 134 I DG 135 I DC 162 J DA 163 J DG 164 J DT
239 J DG 240 J
15 1.80 1.81 56.9 -1.49 -0.68 15.6 74 3 1 0 0 0 1 0  DA 57 I DG 58 I DG 59 I DC 60 I DA 61 I DT 62 I
DG 134 I DG 135 I DA 153 J DT 154 J DC 162 J DC
230 J DA 231 J DT 239 J DG 240 J
16 1.83 1.82 59.8 -1.35 -0.71 14.1 84 3 1 4 2 0 0 0  DA 51 I DT 52 I DA 57 I DG 58 I DG 59 I DC 60 I D
A 61 I DT 62 I DG 134 I DG 164 J DT 236 J DT 237
J DT 238 J DT 239 J
17 1.78 1.78 65.0 -1.27 -0.75 13.4 91 5 1 5 1 0 0 0  DG 46 I DC 47 I DT 48 I DA 57 I DG 58 I DG 59 I
DC 60 I DA 61 I DT 62 I DT 123 I DA 124 I DG 134
I DG 164 J DT 236 J DT 237 J DT 238 J DT 239 J
18 1.82 1.82 67.6 -1.48 -0.72 15.1 80 4 1 1 0 0 1 0  DA 57 I DG 58 I DG 59 I DC 60 I DA 61 I DT 62 I
DG 63 I DT 64 I DG 134 I DG 135 I DA 153 J DT 154
J DC 230 J DA 231 J DT 236 J DT 237 J DT 238 J DT
239 J
19 1.82 1.83 71.1 -2.03 -0.62 22.4 79 6 2 3 2 0 1 0  DA 51 I DT 52 I DG 59 I DC 60 I DA 61 I DT 62 I
DG 134 I DG 135 I DA 153 J DT 154 J DG 164 J DC
230 J DA 231 J DT 239 J
20 2.77 2.85 71.4 -1.19 -0.61 13.6 73 4 0 1 1 0 2 0  DA 57 I DG 58 I DG 59 I DA 133 I DG 134 I DG 135
I DT 142 I DT 143 I DC 155 J DC 156 J DC 162 J DT
239 J DG 240 J
21 2.78 2.85 71.7 -1.93 -0.53 22.2 72 6 1 1 1 0 3 0  DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I DT 64 I D
A 133 I DG 134 I DG 135 I DT 142 I DT 143 I DA
153 J DT 154 J DC 155 J DC 156 J DC 230 J DA 231 J
22 2.78 2.95 79.2 -1.48 -0.59 15.9 81 5 1 5 3 0 2 0  DA 51 I DT 52 I DA 133 I DG 134 I DT 142 I DT 143
I DC 155 J DC 156 J DG 164 J DT 239 J
23 2.31 2.72 89.0 -1.67 -0.68 15.9 91 8 0 8 3 0 0 0  DG 40 I DA 41 I DT 48 I DA 51 I DT 52 I DG 164 J
DT 239 J DG 240 J DG 249 J DT 250 J DA 257 J
24 2.37 2.64 91.6 -1.52 -0.71 17.2 84 7 3 8 2 1 1 0  DT 37 I DT 38 I DT 48 I DA 51 I DT 52 I DA 113 I
DC 114 I DG 164 J DT 239 J DG 240 J DC 260 J DA
261 J
25 2.28 2.72 93.1 -1.44 -0.70 14.0 95 7 0 7 2 0 0 0  DG 40 I DA 41 I DT 48 I DA 57 I DG 134 I DG 135 I
DC 162 J DA 163 J DG 164 J DT 239 J DG 240 J DG
249 J DT 250 J DA 257 J
26 2.32 2.60 95.6 -1.34 -0.73 15.8 86 6 3 7 1 1 1 0  DT 37 I DT 38 I DT 48 I DA 57 I DA 113 I DC 114 I
DG 134 I DG 135 I DC 162 J DA 163 J DG 164 J DT
239 J DG 240 J DC 260 J DA 261 J
27 2.31 2.55 109.9 -1.43 -0.44 16.3 84 9 3 12 3 5 1 0  DT 48 I DA 57 I DA 102 I DG 134 I DG 135 I DC 162
J DA 163 J DG 164 J DC 195 J DT 239 J DG 240 J
28 2.10 2.27 120.8 -1.69 -0.42 19.2 84 9 1 6 4 0 1 0  DT 8 I DC 9 I DC 10 I DG 68 I DC 69 I DG 71 I DA
72 I DA 73 I DT 143 I DG 144 I DA 147 J DA 218 J
DA 219 J DT 220 J DT 221 J DA 279 J DG 280 J DT
282 J
29 2.80 3.68 127.7 -1.84 -0.42 23.4 85 17 4 11 7 2 0 0  DG 68 I DC 69 I DA 102 I DT 143 I DG 144 I DA 147
J DC 195 J DA 219 J DT 220 J DT 221 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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