PDBsum entry 5e3c Go to PDB code:  Tunnel analysis for: 5e3c calculated with MOLE 2.0 PDB id 5e3c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.46 1.51 44.2 -0.87 -0.31 13.2 77 3 4 5 5 5 1 0  MG 804 A 2 1.52 1.98 50.8 -1.47 -0.27 17.9 78 7 3 5 5 7 0 0  MG 804 A 3 1.52 1.97 53.1 -0.99 -0.27 15.2 72 4 2 5 5 7 0 0  MG 804 A 4 1.51 2.02 53.2 -0.81 -0.14 14.7 73 4 2 4 8 9 0 0  MG 804 A 5 1.51 2.02 53.6 -0.14 -0.15 5.3 77 2 2 6 6 7 1 0  MG 804 A 6 1.52 2.00 54.7 -0.02 -0.08 4.9 77 2 2 7 7 8 0 0  MG 804 A 7 1.52 2.12 60.8 -0.89 -0.20 16.8 76 6 4 5 7 7 0 0  MG 804 A 8 1.24 1.19 79.7 -0.40 -0.26 8.2 80 3 6 9 7 10 0 1  K 803 A MG 804 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.