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PDBsum entry 5dup

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protein Protein-protein interface(s) links
Immune system PDB id
5dup

 

 

 

 

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Contents
Protein chains
195 a.a.
208 a.a.
209 a.a.
PDB id:
5dup
Name: Immune system
Title: Influenza a virus h5 hemagglutinin globular head in complex with antibody avfluigg03
Structure: Hemagglutinin. Chain: a. Fragment: globular head, unp residues 61-284. Engineered: yes. Avfluigg03 heavy chain. Chain: h. Engineered: yes. Avfluigg03 light chain. Chain: l.
Source: Influenza a virus (a/anhui/1/2005(h5n1)). Organism_taxid: 370810. Strain: a/anhui/1/2005(h5n1). Gene: ha. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Expression_system_cell_line: sf9. Homo sapiens. Organism_taxid: 9606.
Resolution:
3.05Å     R-factor:   0.207     R-free:   0.257
Authors: T.Zuo,J.Sun,G.Wang,P.Zhou,X.Wang,L.Zhang
Key ref: T.Zuo et al. (2015). Comprehensive analysis of antibody recognition in convalescent humans from highly pathogenic avian influenza H5N1 infection. Nat Commun, 6, 8855. PubMed id: 26635249 DOI: 10.1038/ncomms9855
Date:
20-Sep-15     Release date:   16-Dec-15    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q1WDM0  (Q1WDM0_9INFA) -  Hemagglutinin from Influenza A virus
Seq:
Struc:
 
Seq:
Struc:
567 a.a.
195 a.a.
Protein chain
No UniProt id for this chain
Struc: 208 a.a.
Protein chain
No UniProt id for this chain
Struc: 209 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1038/ncomms9855 Nat Commun 6:8855 (2015)
PubMed id: 26635249  
 
 
Comprehensive analysis of antibody recognition in convalescent humans from highly pathogenic avian influenza H5N1 infection.
T.Zuo, J.Sun, G.Wang, L.Jiang, Y.Zuo, D.Li, X.Shi, X.Liu, S.Fan, H.Ren, H.Hu, L.Sun, B.Zhou, M.Liang, P.Zhou, X.Wang, L.Zhang.
 
  ABSTRACT  
 
Understanding the mechanism of protective antibody recognition against highly pathogenic avian influenza A virus H5N1 in humans is critical for the development of effective therapies and vaccines. Here we report the crystal structure of three H5-specific human monoclonal antibodies bound to the globular head of hemagglutinin (HA) with distinct epitope specificities, neutralization potencies and breadth. A structural and functional analysis of these epitopes combined with those reported elsewhere identifies four major vulnerable sites on the globular head of H5N1 HA. Chimeric and vulnerable site-specific mutant pseudoviruses are generated to delineate broad neutralization specificities of convalescent sera from two individuals who recovered from the infection with H5N1 virus. Our results show that the four vulnerable sites on the globular head rather than the stem region are the major neutralizing targets, suggesting that during natural H5N1 infection neutralizing antibodies against the globular head work in concert to provide protective antibody-mediated immunity.
 

 

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