PDBsum entry 5dss Go to PDB code:  Tunnel analysis for: 5dss calculated with MOLE 2.0 PDB id 5dss Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.26 18.9 0.95 0.18 4.4 77 2 0 2 4 3 0 0   2 1.22 1.92 26.8 0.11 -0.10 4.8 80 2 0 3 6 1 1 0   3 1.18 2.55 32.0 0.75 0.18 4.0 81 0 1 2 5 3 0 0   4 1.29 4.49 32.1 1.30 0.44 3.5 73 2 0 3 9 3 1 0   5 1.24 4.58 33.4 1.44 0.47 3.0 75 2 0 3 10 3 0 0   6 1.19 2.44 39.8 0.79 0.16 3.7 81 1 2 1 5 3 0 0   7 1.17 4.06 40.8 1.21 0.33 3.4 75 0 1 2 8 4 0 0   8 1.21 2.58 41.6 0.16 0.02 9.1 78 2 2 1 4 3 0 1   9 1.23 2.58 46.0 1.76 0.73 2.3 74 2 0 2 11 6 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.