PDBsum entry 5dnm Go to PDB code:  Pore analysis for: 5dnm calculated with MOLE 2.0 PDB id 5dnm Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.63 3.84 26.1 -2.05 -0.73 22.8 88 4 1 3 1 0 0 0  DA -72 I DC -64 I DC -63 I DG - 55 I DT 19 I DA 59 J DG 60 J DT 68 J DT 69 J 2 1.16 1.16 37.6 -1.41 -0.56 14.3 74 2 0 0 2 0 1 0  DC -7 I DA -6 I DG -5 I DC -4 I DT -3 I DG - 2 I DA 71 I DT 72 I DA -69 J DT 6 J DG 7 J DA 8 J 3 3.38 3.39 41.2 -2.68 -0.33 31.4 74 6 0 0 0 1 0 0  DG -34 I DA 37 I DT 38 I DC 40 I DC 42 I DA - 45 J DA -44 J DA -43 J DG -42 J DT -41 J DG - 40 J DT -39 J DT 31 J 4 1.82 1.82 41.4 -2.68 -0.59 31.1 73 5 1 0 0 0 1 0  DA -72 I DA -66 I DT -65 I DC -64 I DC - 63 I DC 10 I DT 12 I DG -14 J DC -13 J DT - 11 J DG - 10 J DG 60 J DG 61 J DT 62 J DT 68 J DT 69 J 5 2.30 2.30 51.0 -2.18 -0.66 25.7 80 5 2 1 1 0 1 0  DA -66 I DT -65 I DG - 55 I DC 10 I DT 12 I DT 19 I DG -14 J DC - 13 J DT -11 J DG -10 J DG 60 J DG 61 J 6 2.74 2.90 53.2 -1.77 -0.71 18.7 93 5 0 5 0 0 0 0  DG -34 I DC -24 I DA -16 I DG 60 I DG 61 I DC - 57 J DA -56 J DG -55 J DA - 44 J DT 19 J DG 20 J DA 28 J DG 29 J DT 30 J DT 31 J 7 2.88 2.88 57.8 -1.89 -0.65 22.1 85 4 0 1 0 0 0 0  DG -34 I DA -32 I DA -31 I DA -30 I DC -29 I DA - 44 J DA 28 J DG 29 J DT 30 J DT 31 J DC 33 J DC 34 J DA 35 J DA 36 J 8 2.64 2.64 61.7 -1.36 -0.70 14.7 82 3 0 1 0 0 0 0  DA -16 I DG -15 I DG - 14 I DA 59 I DG 60 I DG 61 I DA 65 I DT 66 I DA 67 I DT 68 I DC -64 J DC -63 J DA -62 J DC - 57 J DT 19 J DG 20 J 9 1.64 1.63 62.0 -1.04 -0.65 11.0 79 2 1 0 1 0 1 0  DA -16 I DG -15 I DG -14 I DT -8 I DC - 7 I DG 60 I DG 61 I DA 71 I DT 72 I DA -69 J DT - 67 J DA -66 J DT -65 J DC - 57 J DC 10 J DA 11 J DT 12 J DT 19 J DG 20 J 10 3.21 3.19 68.6 -2.24 -0.45 26.9 85 8 1 4 2 2 0 0  DA -44 I DG -42 I DT -41 I DA -31 I DA -30 I DC - 29 I DA 28 I DG -34 J DC - 24 J DC 33 J DC 34 J DA 35 J DA 36 J DA 37 J DT 38 J DA 39 J DC 40 J 11 2.78 3.39 76.6 -1.85 -0.66 22.6 87 7 2 5 1 1 0 0  DA -44 I DG -34 I DA 28 I DA 39 I DA -45 J DA - 44 J DT -35 J DG -34 J DC -24 J DT 31 J DA 39 J 12 2.91 3.15 79.6 -1.51 -0.53 16.8 92 7 0 5 4 1 0 0  SO4 201 G DA 28 I DG 29 I DA 36 I DA 37 I DT - 39 J DA -32 J DA -31 J DC -24 J 13 1.27 1.28 82.4 -1.29 -0.50 17.2 80 8 0 0 4 0 1 0  DC -7 I DA -6 I DG -5 I DC -4 I DT -3 I DG - 2 I DA -1 I DA 0 I DT 1 I DA 71 I DT 72 I DA - 69 J DG -5 J DC -4 J DT -3 J DG - 2 J DT 0 J DG 7 J DA 8 J 14 2.09 2.09 88.2 -1.60 -0.72 17.1 91 5 2 5 1 0 0 0  DC -26 I DT -25 I DC -24 I DG -14 I DT -8 I DC - 7 I DT 49 I DA 50 I DG 51 I DA 59 I DG 60 I DG 61 I DT 62 I DA 71 I DT 72 I DA -69 J DT -67 J DA - 66 J DT -65 J DC -64 J DG -55 J DC - 47 J DC 10 J DA 11 J DT 12 J DT 19 J 15 2.88 2.88 97.6 -1.49 -0.66 15.3 92 8 0 7 2 0 0 0  DA -32 I DA -31 I DA -30 I DC -24 I DA - 16 I DG 60 I DG 61 I DC -57 J DA -56 J DG - 55 J DT 19 J DG 20 J DA 28 J DG 29 J DC 33 J DC 34 J DA 35 J DA 36 J 16 2.48 3.06 100.6 -1.77 -0.33 19.8 85 11 2 12 4 5 0 0  DC -24 I DA -16 I DG 60 I DG 61 I DC -57 J DA - 56 J DG -55 J DC -24 J DT 19 J DG 20 J DA 28 J 17 2.18 2.16 103.6 -1.49 -0.74 15.1 92 5 1 6 0 0 0 0  DC -26 I DT -25 I DC - 24 I DT 49 I DA 50 I DG 51 I DA 59 I DG 60 I DA 65 I DT 66 I DA 67 I DT 68 I DC -64 J DC - 63 J DA -62 J DG -55 J DC -47 J DT 19 J Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.