PDBsum entry 5dnd Go to PDB code:  Pore analysis for: 5dnd calculated with MOLE 2.0 PDB id 5dnd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 4.06 5.16 46.1 -2.70 -0.69 30.0 85 6 6 6 2 0 2 0   2 3.97 3.97 54.2 -2.57 -0.71 27.1 89 6 7 8 2 0 2 0   3 1.58 1.61 65.5 -0.36 -0.41 11.3 86 3 5 5 9 1 2 0   4 1.55 1.57 80.6 -0.89 -0.50 12.4 89 6 5 7 5 1 3 0   5 3.00 5.28 91.3 -1.27 -0.60 13.2 85 2 6 5 4 1 6 0   6 1.59 1.81 101.7 -0.88 -0.44 12.0 84 4 6 6 6 1 7 0   7 3.23 3.34 110.8 -2.09 -0.61 22.7 80 9 8 7 2 1 8 0   8 1.24 2.25 194.0 -0.26 -0.33 8.9 82 3 8 8 17 1 9 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.