PDBsum entry 5dkj Go to PDB code:  Tunnel analysis for: 5dkj calculated with MOLE 2.0 PDB id 5dkj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 34 tunnels, coloured by tunnel radius 34 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.55 73.6 -0.31 -0.15 10.8 79 6 2 5 9 8 1 2  5BY 301 H 5BY 201 N 2 1.31 1.52 102.4 -0.75 -0.25 11.4 83 7 4 9 11 8 1 0  5BY 301 H 5BY 201 N 5BY 302 Y 3 1.32 1.50 120.3 -1.01 -0.24 12.8 81 8 6 9 9 9 0 0  5BY 301 H 5BY 201 N 4 1.32 1.51 120.3 -1.06 -0.24 13.1 81 8 5 9 9 9 0 0  5BY 301 H 5BY 201 N 5 1.33 1.50 121.5 -0.87 -0.23 10.7 83 7 5 12 11 10 1 0  5BY 301 H 5BY 301 K 5BY 201 N 6 1.33 1.50 137.7 -1.81 -0.21 21.2 79 13 5 10 8 9 1 0  5BY 301 H 5BY 201 N 7 1.34 1.56 139.2 -1.39 -0.22 16.6 80 13 5 13 9 11 0 1  5BY 301 H 5BY 201 N 8 1.33 1.51 141.2 -1.54 -0.25 17.8 80 10 4 12 8 11 0 0  5BY 301 H 5BY 201 N 9 1.33 1.52 145.9 -1.75 -0.27 19.1 82 11 5 14 7 11 0 0  5BY 301 H 5BY 201 N 10 1.34 1.57 149.9 -1.79 -0.22 22.2 81 16 6 11 7 12 0 0  5BY 301 H 5BY 201 N 11 1.34 1.56 150.5 -1.69 -0.29 18.2 82 12 7 13 7 9 0 0  5BY 301 H 5BY 201 N 12 1.34 1.56 152.0 -1.68 -0.26 20.2 81 14 8 13 10 9 1 0  5BY 301 H 5BY 201 N 13 1.33 1.54 150.1 -1.72 -0.26 18.9 79 16 6 9 6 11 0 0  5BY 301 H 5BY 201 N 14 1.33 1.52 154.9 -1.76 -0.29 19.2 80 14 5 10 7 10 1 0  5BY 301 H 5BY 201 N 15 1.20 1.20 154.3 -1.03 -0.18 14.3 79 11 3 13 10 12 1 0  5BY 301 H 5BY 201 N 16 1.34 1.57 153.5 -1.27 -0.17 15.7 82 15 3 9 9 11 0 0  5BY 301 H 5BY 201 N 17 1.30 1.31 156.2 -1.13 -0.17 14.7 78 14 5 11 11 10 1 0  5BY 301 H 5BY 201 N 18 1.34 1.56 159.2 -1.49 -0.18 19.9 80 14 7 11 9 13 0 0  5BY 301 H 5BY 201 N 19 1.34 1.56 159.2 -1.41 -0.25 15.6 79 15 5 13 9 13 1 1  5BY 301 H 5BY 201 N 20 1.35 1.51 163.1 -1.24 -0.16 18.5 81 13 8 13 10 12 0 0  5BY 301 H 5BY 201 N 21 1.34 1.56 161.3 -1.55 -0.28 16.7 80 11 4 13 8 13 0 0  5BY 301 H 5BY 201 N 22 1.33 1.53 163.2 -1.77 -0.32 18.1 83 12 5 15 7 10 0 0  5BY 301 H 5BY 201 N 23 1.34 1.57 165.4 -1.26 -0.26 14.0 82 12 5 13 10 11 1 0  5BY 301 H 5BY 201 N 24 1.34 1.55 168.8 -1.74 -0.27 20.5 82 17 6 12 7 12 0 0  5BY 301 H 5BY 201 N 25 1.34 1.57 169.9 -1.69 -0.34 17.2 81 13 7 14 6 11 0 0  5BY 301 H 5BY 201 N 26 1.34 1.54 170.6 -1.61 -0.27 18.5 80 15 8 14 9 11 1 0  5BY 301 H 5BY 201 N 27 1.34 1.56 171.6 -1.49 -0.22 18.3 80 14 7 12 9 13 0 0  5BY 301 H 5BY 201 N 28 1.34 1.56 169.3 -1.74 -0.31 17.8 79 17 6 10 5 13 0 0  5BY 301 H 5BY 201 N 29 1.18 1.32 170.9 -1.51 -0.40 16.4 81 13 6 12 6 10 0 0  5BY 301 H 5BY 201 N 30 1.34 1.56 172.8 -1.37 -0.24 15.3 81 16 3 10 8 13 0 0  5BY 301 H 5BY 201 N 31 1.35 1.50 174.3 -1.25 -0.24 16.4 81 13 8 13 10 12 0 0  5BY 301 H 5BY 201 N 32 1.34 1.55 177.0 -1.17 -0.18 12.9 78 12 6 14 11 12 3 0  5BY 301 H 5BY 201 N 33 1.25 1.26 180.4 -1.16 -0.23 13.8 79 13 3 14 10 15 1 0  5BY 301 H 5BY 201 N 34 1.34 1.56 180.2 -1.29 -0.22 15.1 79 15 5 13 11 12 1 0  5BY 301 H 5BY 201 N Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.