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PDBsum entry 5dki
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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 5dki calculated with MOLE 2.0 PDB id
5dki
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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56 tunnels, coloured by tunnel radius 30 tunnels, coloured by tunnel radius 30 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.40 1.54 73.7 -0.44 -0.15 12.4 82 7 2 7 9 7 1 2  5BZ 302 V
2 1.18 1.12 101.3 -0.60 -0.13 8.1 81 5 2 11 10 11 2 0  5BZ 201 b
3 1.41 1.52 102.4 -0.72 -0.19 11.5 85 6 4 10 11 7 1 0  5BZ 301 K 5BZ 302 V
4 1.34 1.47 119.0 -0.86 -0.26 10.6 83 7 4 13 11 10 2 0  5BZ 302 V 5BZ 302 Y
5 1.37 1.50 120.3 -1.11 -0.23 13.9 83 7 5 10 9 8 0 0  5BZ 302 V
6 1.37 1.50 121.0 -1.12 -0.24 13.6 83 7 6 10 9 8 0 0  5BZ 302 V
7 1.19 1.70 134.4 -1.98 -0.24 23.7 81 12 6 10 8 9 1 0  5BZ 302 V
8 1.34 1.52 136.9 -0.97 -0.19 13.7 84 10 6 14 9 9 1 2  5BZ 301 H 5BZ 302 V
9 1.34 1.53 138.6 -1.52 -0.19 17.8 80 12 5 14 9 12 0 1  5BZ 302 V
10 1.35 1.51 141.3 -1.64 -0.21 19.2 80 10 4 13 7 12 0 0  5BZ 302 V
11 1.34 1.49 142.1 -1.74 -0.23 19.2 84 10 4 14 7 10 0 0  5BZ 302 V
12 1.36 1.55 148.0 -1.90 -0.22 23.2 82 15 6 12 7 11 1 0  5BZ 302 V
13 1.34 1.51 149.0 -1.48 -0.14 19.6 82 12 7 12 9 11 0 0  5BZ 302 V
14 1.25 1.25 149.5 -1.15 -0.17 15.1 80 11 3 14 9 12 1 0  5BZ 302 V
15 1.36 1.53 151.5 -1.77 -0.24 21.1 81 13 8 14 9 10 1 0  5BZ 302 V
16 1.35 1.54 150.6 -1.87 -0.25 20.7 79 15 6 10 5 12 0 0  5BZ 302 V
17 1.35 1.55 154.2 -1.36 -0.17 16.6 82 14 3 10 8 12 0 0  5BZ 302 V
18 1.36 1.55 157.0 -1.51 -0.26 16.2 80 12 5 15 8 12 1 1  CL 303 G 5BZ 302 V
19 1.29 1.29 159.4 -1.29 -0.18 16.0 79 13 5 13 11 11 1 0  5BZ 302 V
20 1.34 1.54 158.8 -1.67 -0.29 17.5 80 10 4 14 7 13 0 0  5BZ 302 V
21 1.34 1.49 158.1 -1.89 -0.32 20.8 82 13 6 11 7 9 0 0  5BZ 302 V
22 1.34 1.47 158.3 -1.78 -0.30 18.1 85 11 4 15 7 9 0 0  5BZ 302 V
23 1.35 1.54 166.1 -1.73 -0.32 17.6 83 11 7 15 6 10 0 0  5BZ 302 V
24 1.35 1.54 166.8 -1.85 -0.29 21.5 83 16 6 13 8 11 0 0  5BZ 302 V
25 1.34 1.53 167.6 -1.59 -0.23 18.4 83 13 7 14 8 12 0 0  5BZ 302 V
26 1.35 1.55 167.9 -1.83 -0.31 19.0 80 15 6 11 5 12 0 0  5BZ 302 V
27 1.37 1.53 172.2 -1.77 -0.30 18.8 81 15 6 16 9 11 1 0  5BZ 302 V
28 1.37 1.52 174.7 -1.21 -0.15 13.3 79 11 6 14 11 11 3 0  5BZ 302 V
29 1.36 1.63 177.2 -1.36 -0.24 14.8 80 14 5 14 10 11 1 0  5BZ 302 V
30 1.32 1.32 179.3 -1.11 -0.19 14.3 80 12 3 15 10 14 1 0  5BZ 302 V

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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