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PDBsum entry 5dbk
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Pore analysis for: 5dbk calculated with  MOLE 2.0
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PDB id
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5dbk
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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8 pores,
coloured by radius |
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8 pores,
coloured by radius
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8 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.80 |
5.95 |
26.3 |
-1.01 |
-0.20 |
20.7 |
89 |
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3 |
4 |
3 |
3 |
1 |
0 |
0 |
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2 |
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1.84 |
2.02 |
29.4 |
-0.92 |
0.17 |
24.2 |
70 |
5 |
3 |
2 |
5 |
4 |
0 |
0 |
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3 |
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2.82 |
2.94 |
32.6 |
-1.05 |
-0.20 |
19.2 |
82 |
5 |
4 |
1 |
4 |
1 |
0 |
0 |
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4 |
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3.23 |
5.31 |
33.6 |
-1.52 |
-0.02 |
25.5 |
79 |
7 |
5 |
3 |
7 |
3 |
0 |
0 |
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5 |
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1.20 |
1.34 |
35.7 |
-0.37 |
0.11 |
15.1 |
80 |
4 |
4 |
5 |
6 |
2 |
0 |
0 |
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6 |
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1.19 |
1.32 |
36.2 |
-1.08 |
-0.02 |
16.0 |
80 |
4 |
3 |
5 |
7 |
3 |
0 |
0 |
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7 |
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2.81 |
2.93 |
50.9 |
-1.22 |
-0.10 |
20.8 |
84 |
5 |
6 |
4 |
9 |
2 |
0 |
0 |
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8 |
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1.65 |
2.53 |
60.8 |
-1.47 |
-0.22 |
21.4 |
84 |
8 |
6 |
6 |
4 |
3 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program