PDBsum entry 5dba Go to PDB code:  Tunnel analysis for: 5dba calculated with MOLE 2.0 PDB id 5dba Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.33 27.7 -2.07 -0.60 23.8 74 2 3 0 0 2 1 0  DG 9 P DA 10 P DC 8 T DG 9 T 2 1.33 1.33 28.3 -1.75 -0.57 24.6 80 4 4 1 0 2 0 0  DA 10 P DG 6 T 3 1.23 1.47 38.2 -1.63 -0.52 20.7 92 4 2 3 1 0 0 0  DG 7 P DC 8 P DG 9 P DA 10 P DG 9 T DT 12 T DT 13 T DA 14 T 4 1.32 1.32 38.5 -1.97 -0.47 26.3 75 4 3 0 1 2 0 0  DA 10 P DC 5 T DG 6 T 5 1.32 1.32 44.8 -2.48 -0.53 29.8 77 5 3 2 0 2 1 0  DG 4 D DA 10 P DG 6 T 6 1.33 1.33 46.0 -1.33 -0.11 21.7 76 5 3 1 1 3 1 0  DT 6 P DG 7 P DC 8 P DG 9 P DA 10 P DG 6 T DT 7 T DC 8 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.