PDBsum entry 5da9 Go to PDB code:  Pore analysis for: 5da9 calculated with MOLE 2.0 PDB id 5da9 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.00 3.30 38.4 -2.46 -0.70 27.6 87 3 4 4 1 0 1 0   2 1.26 2.08 56.0 0.55 0.18 7.3 84 1 4 3 12 3 1 0  MSE 483 D 3 1.21 1.91 67.7 -0.41 0.03 19.7 83 4 6 3 10 2 1 0  MSE 483 D 4 1.97 2.89 95.7 -2.42 -0.67 29.8 82 10 16 5 5 0 5 0   5 1.23 1.15 161.6 -1.65 -0.42 24.4 81 20 13 6 12 0 3 1  AGS 1402 A MSE 166 B MSE 1194 B MSE 1201 B MSE 1203 B 6 1.77 1.79 184.4 -1.46 -0.48 21.3 84 16 17 11 14 1 6 0  MSE 1138 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.