PDBsum entry 5da9 Go to PDB code:  Tunnel analysis for: 5da9 calculated with MOLE 2.0 PDB id 5da9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.41 53.1 -0.61 -0.34 15.0 85 5 7 5 8 2 1 0   2 1.29 1.40 80.2 -0.29 -0.15 13.8 81 11 6 6 12 2 1 1  AGS 1402 A MSE 166 B MSE 1194 B MSE 1201 B MSE 1203 B 3 1.17 1.63 17.7 0.58 0.25 15.8 86 1 4 1 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.