PDBsum entry 5d80 Go to PDB code:  Pore analysis for: 5d80 calculated with MOLE 2.0 PDB id 5d80 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.09 2.89 40.7 0.13 -0.03 7.6 82 4 0 3 6 2 1 0   2 2.58 3.97 43.1 -0.82 -0.25 16.0 85 3 3 4 6 3 0 0   3 2.41 2.66 55.2 -0.43 -0.01 11.1 76 7 1 2 10 3 2 0   4 1.86 1.90 56.8 0.90 0.18 7.9 83 3 2 1 16 2 1 0   5 1.51 1.51 63.1 0.61 0.10 10.3 83 5 3 1 13 2 2 0   6 1.31 1.39 69.2 1.07 0.29 10.0 82 3 5 3 15 1 0 0   7 1.74 1.74 97.4 1.37 0.45 6.5 79 4 3 4 30 3 0 1   8 1.43 1.46 100.5 0.22 0.02 11.8 79 5 6 7 20 4 0 1   9 2.60 3.02 114.4 -0.59 -0.23 11.0 85 7 10 12 15 5 2 0   10 1.41 1.40 124.4 -0.37 -0.09 16.4 80 12 11 6 20 5 1 0   11 1.42 1.42 144.9 -0.48 -0.21 15.4 82 14 10 8 21 3 3 0   12 1.75 1.78 154.0 -0.19 -0.22 10.2 84 3 12 9 28 5 3 0   13 1.89 1.95 171.3 -0.24 -0.12 10.1 82 8 7 10 21 10 1 0   14 1.39 1.38 178.0 -0.59 -0.32 15.4 84 13 13 9 20 3 1 0   15 1.75 1.79 189.0 0.06 -0.09 8.8 81 9 8 9 27 9 3 0   16 2.00 3.03 202.1 -0.12 -0.28 11.1 86 11 14 10 26 2 1 0   17 2.05 2.51 209.4 -0.45 -0.19 14.8 82 12 16 17 30 5 0 1   18 1.67 1.74 211.8 0.11 -0.11 10.7 84 10 10 7 31 6 3 0   19 2.06 2.05 219.5 -0.05 -0.17 11.3 81 11 15 14 36 7 2 0   20 1.75 1.96 234.0 -0.20 -0.15 10.1 81 14 11 16 35 7 3 1   21 1.42 1.41 243.3 0.08 -0.12 8.9 82 13 10 10 38 9 2 0   22 2.10 2.09 257.8 -0.27 -0.20 12.3 80 13 15 10 32 10 1 0   23 1.86 1.81 260.5 -0.35 -0.23 13.3 80 16 14 14 33 7 1 1   24 1.94 1.95 265.8 -0.19 -0.17 12.3 84 15 13 14 39 7 0 0   25 1.89 2.13 345.8 -0.18 -0.16 11.7 81 19 17 22 43 10 0 0   26 1.94 2.08 359.2 -0.77 -0.31 14.8 84 21 24 29 36 8 0 0   27 1.69 1.83 365.2 -0.56 -0.28 11.5 83 15 22 25 38 11 6 0   28 2.00 2.13 376.4 -0.38 -0.20 9.2 82 20 18 26 43 16 12 0   29 1.66 1.79 424.0 -0.39 -0.26 11.3 83 19 23 24 46 14 6 0   30 1.81 1.82 435.2 -0.19 -0.17 8.9 82 24 19 25 51 19 12 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.