PDBsum entry 5d80 Go to PDB code:  Tunnel analysis for: 5d80 calculated with MOLE 2.0 PDB id 5d80 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.10 1.31 50.2 -0.12 -0.17 7.5 80 1 3 3 8 3 1 0   2 1.15 1.35 71.4 -0.23 -0.30 7.2 83 1 6 6 13 4 3 0   3 1.19 1.31 93.7 0.24 0.06 7.1 81 3 4 6 17 5 2 0   4 1.24 1.31 97.4 -0.53 -0.35 11.1 80 6 6 4 10 4 2 0   5 1.26 1.33 111.3 -0.53 -0.27 8.8 83 5 6 8 15 5 5 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.