PDBsum entry 5d6j

Pore analysis for: 5d6j calculated with

MOLE 2.0

PDB id

5d6j

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

6 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.30

1.60

35.5

-1.64

-0.30

14.5

84

5

2

3

4

2

1

0

2

3.03

3.33

35.9

-1.15

-0.38

12.0

85

2

3

3

5

3

1

0

3

1.30

1.57

36.7

-2.04

-0.47

20.1

81

5

4

4

3

4

1

0

4

1.30

1.76

36.7

-1.45

-0.32

15.4

83

5

3

2

4

2

0

0

5

2.23

2.36

44.5

-2.21

-0.55

23.9

84

7

4

3

2

1

1

0

MG 701 A ATP 702 A

6

1.30

2.10

50.3

-1.69

-0.41

17.7

81

8

4

3

4

2

1

0

MG 701 A ATP 702 A

7

2.00

2.50

50.6

-1.41

-0.40

18.2

86

6

5

4

4

1

3

0

MG 701 A ATP 702 A

8

2.23

2.83

58.2

-1.29

-0.34

14.3

85

7

4

2

7

2

1

0

MG 701 A ATP 702 A

9

1.43

2.35

139.1

-1.73

-0.54

21.6

86

11

11

5

8

1

2

0

MG 701 A ATP 702 A

10

1.74

4.52

86.1

-1.88

-0.29

19.6

75

8

4

2

2

3

5

0

11

1.06

1.06

69.5

-2.83

-0.67

31.2

83

6

3

2

2

0

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.