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PDBsum entry 5d6j
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Tunnel analysis for: 5d6j calculated with  MOLE 2.0
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PDB id
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5d6j
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.18 |
2.20 |
46.2 |
0.89 |
0.24 |
7.8 |
83 |
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3 |
1 |
4 |
9 |
2 |
2 |
0 |
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2 |
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1.17 |
2.12 |
50.7 |
0.25 |
-0.03 |
11.9 |
86 |
5 |
2 |
3 |
10 |
1 |
0 |
0 |
MG 701 A ATP 702 A
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3 |
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1.18 |
2.19 |
63.2 |
-0.10 |
-0.07 |
12.2 |
85 |
5 |
4 |
6 |
9 |
2 |
1 |
0 |
ATP 702 A
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4 |
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1.17 |
2.19 |
69.0 |
-0.04 |
-0.04 |
10.0 |
83 |
6 |
4 |
6 |
11 |
3 |
1 |
0 |
ATP 702 A
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5 |
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1.21 |
2.17 |
68.9 |
0.20 |
0.07 |
8.1 |
86 |
5 |
3 |
5 |
13 |
3 |
1 |
0 |
ATP 702 A
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6 |
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1.33 |
1.53 |
16.6 |
-1.63 |
-0.33 |
24.1 |
74 |
3 |
1 |
0 |
2 |
1 |
1 |
0 |
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7 |
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1.96 |
2.12 |
19.5 |
-1.25 |
-0.25 |
17.8 |
78 |
4 |
1 |
2 |
2 |
1 |
0 |
0 |
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8 |
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1.07 |
1.07 |
33.5 |
-0.41 |
-0.12 |
15.0 |
81 |
4 |
2 |
1 |
5 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program