PDBsum entry 5d4e Go to PDB code:  Pore analysis for: 5d4e calculated with MOLE 2.0 PDB id 5d4e Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   24 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.09 1.10 40.6 -1.70 -0.61 21.2 83 3 6 3 3 2 0 0   2 1.11 2.15 50.6 -1.69 -0.32 27.8 74 5 4 3 10 2 1 0   3 2.28 2.31 75.8 -1.66 -0.34 25.2 82 10 5 2 7 3 2 0   4 2.42 2.72 86.9 -2.01 -0.34 26.9 82 12 8 3 9 3 0 0   5 1.65 1.68 96.9 -1.91 -0.50 25.4 81 14 10 6 7 5 2 0   6 1.16 1.75 132.1 -1.59 -0.40 23.6 81 14 15 6 11 2 6 0  DT 4 R DG 5 R DC 6 R DA 17 S DC 18 S 7 1.22 1.25 141.1 -1.59 -0.48 25.3 84 16 15 5 11 5 4 0  MG 2001 B 8 1.30 1.33 145.1 -2.07 -0.47 29.2 77 14 12 8 12 3 2 0  DG 5 G DC 6 G DA 7 G DA 17 H DC 18 H DG 19 H DT 22 H 9 1.28 1.28 146.9 -1.99 -0.48 26.5 82 20 13 8 7 2 3 0  DT 4 R DG 5 R DC 6 R DA 7 R DT 8 R DC 9 R DC 10 R DC 16 S DC 18 S DG 19 S 10 1.31 1.36 150.6 -1.56 -0.48 21.3 77 13 13 8 11 2 3 0   11 1.77 3.34 168.8 -1.65 -0.44 19.6 77 18 14 10 13 5 9 0  DT 8 G DC 10 G DA 19 G DG 11 H DC 16 H DA 17 H DC 18 H 12 1.45 3.84 178.1 -2.09 -0.53 20.9 79 14 7 14 8 4 8 0   13 1.93 2.04 179.4 -1.64 -0.50 19.9 77 18 16 11 12 3 9 0  DT 4 R DG 5 R DC 6 R DA 7 R DT 8 R DC 9 R DC 10 R DA 19 R DG 11 S DC 16 S DC 18 S DG 19 S 14 1.63 1.66 182.7 -1.26 -0.52 19.1 80 11 12 5 8 2 4 0  DT 8 G DC 9 G DC 10 G DC 16 H DA 17 H DC 18 H DC 24 H DA 25 H 15 2.14 2.20 203.0 -2.21 -0.65 26.7 79 16 25 13 11 4 9 0   16 1.59 1.61 202.3 -1.65 -0.39 19.6 75 20 13 10 10 10 9 0  DT 8 G DC 10 G DA 19 G DG 11 H DC 16 H DA 17 H DC 18 H 17 1.19 1.49 242.0 -1.93 -0.54 26.0 80 18 29 14 18 6 9 0   18 1.23 1.14 243.8 -1.83 -0.47 24.1 81 26 23 15 18 3 8 0  DC 9 R DC 10 R DA 19 R DG 11 S DC 16 S 19 1.20 1.31 241.2 -1.71 -0.37 25.6 82 27 22 9 17 4 8 0  DT 8 R DC 9 R DC 10 R DA 4 S DC 16 S DA 17 S DC 18 S 20 2.15 2.45 251.0 -2.07 -0.66 23.4 78 20 23 14 11 5 11 0  DT 4 R DG 5 R DC 6 R DA 7 R DT 8 R DC 9 R DC 10 R DA 19 R DG 11 S DC 16 S DC 18 S DG 19 S 21 1.30 1.26 262.7 -1.63 -0.19 21.0 78 24 14 6 11 5 7 0  DT 8 G DC 9 G DC 10 G DG 7 H DC 16 H DA 17 H DC 18 H DT 4 R DG 5 R DT 22 S DG 23 S DC 24 S DA 25 S 22 1.20 1.76 293.9 -1.98 -0.57 24.7 81 27 29 20 17 4 9 0  DC 9 R DC 10 R DA 19 R DG 11 S DC 16 S 23 1.30 1.29 308.7 -1.34 -0.46 17.8 79 23 23 13 16 6 12 0  DT 8 G DC 9 G DC 10 G DA 19 G DG 11 H DC 24 H DA 25 H 24 1.31 1.39 309.2 -1.71 -0.40 24.4 80 31 27 15 22 9 12 0  DC 9 R DC 10 R DA 19 R DA 4 S DG 11 S DC 16 S 25 1.71 1.99 310.0 -1.55 -0.37 23.7 81 28 30 12 25 7 15 0  DT 8 R DC 9 R DC 10 R DA 19 R DG 11 S DC 16 S DA 17 S DC 18 S 26 1.32 1.36 515.3 -1.44 -0.31 19.3 80 47 38 20 26 10 20 0  DC 9 G DC 10 G DA 19 G DG 7 H DG 11 H DT 8 R DC 9 R DC 10 R DC 16 S DA 17 S DC 18 S DG 23 S DC 24 S DA 25 S 27 1.19 1.20 558.3 -1.63 -0.39 20.0 78 54 42 28 27 13 22 0  DC 9 G DC 10 G DA 19 G DG 7 H DG 11 H DT 8 R DC 9 R DC 10 R DA 19 R DG 11 S DC 16 S DG 23 S DC 24 S DA 25 S 28 1.18 1.19 602.0 -1.72 -0.44 20.5 79 49 45 28 25 13 24 0  DC 9 G DC 10 G DA 19 G DG 7 H DG 11 H DT 8 R DC 9 R DC 10 R DA 19 R DG 11 S DC 16 S DG 23 S DC 24 S DA 25 S 29 1.13 1.49 54.5 -0.95 -0.18 17.8 72 2 5 1 3 2 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.