PDBsum entry 5d4e Go to PDB code:  Tunnel analysis for: 5d4e calculated with MOLE 2.0 PDB id 5d4e Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 tunnels, coloured by tunnel radius 19 tunnels, coloured by tunnel radius 19 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 2.02 53.0 -1.89 -0.50 17.6 88 7 5 9 6 1 0 0  C5P 1604 N DPO 1605 N DA 14 R DG 15 R DT 16 R COD 101 R 2 1.30 2.09 84.0 -1.26 -0.24 18.5 80 12 5 6 9 3 1 0  C5P 1604 N DG 15 R DT 16 R DA 17 R DA 19 R COD 101 R 3 1.32 2.15 93.9 -1.65 -0.24 19.1 83 14 3 8 7 5 1 0  C5P 1604 N DG 15 R DT 16 R DA 17 R DA 19 R COD 101 R 4 1.32 2.18 95.1 -1.75 -0.45 17.9 80 12 4 7 5 3 4 0  C5P 1604 N DC 9 R DC 10 R DG 15 R DT 16 R DA 17 R COD 101 R DG 11 S DC 16 S 5 1.30 2.01 95.0 -1.59 -0.27 19.4 79 13 6 6 7 5 2 0  C5P 1604 N DG 15 R DT 16 R DA 17 R DA 19 R COD 101 R 6 1.30 2.16 99.2 -1.91 -0.38 23.8 81 14 8 8 9 3 2 0  C5P 1604 N DG 15 R DT 16 R DA 17 R DA 19 R COD 101 R 7 1.31 2.20 105.8 -2.08 -0.31 23.7 82 17 5 10 8 4 2 0  C5P 1604 N DG 15 R DT 16 R DA 17 R DA 19 R COD 101 R 8 1.30 2.03 107.9 -1.54 -0.37 21.8 80 12 11 9 10 5 2 0  C5P 1604 N DG 15 R DT 16 R DA 17 R DA 19 R COD 101 R 9 1.30 2.08 110.7 -1.56 -0.37 21.7 79 15 8 8 11 4 1 0  C5P 1604 N DG 15 R DT 16 R DA 17 R DA 19 R COD 101 R 10 1.32 2.05 125.3 -1.64 -0.35 20.5 78 15 10 10 11 5 4 0  C5P 1604 N DG 15 R DT 16 R DA 17 R DA 19 R COD 101 R 11 1.30 2.14 127.3 -1.90 -0.34 23.6 81 18 8 6 10 5 2 0  C5P 1604 N DG 15 R DT 16 R DA 17 R DA 19 R COD 101 R DA 10 S DG 11 S 12 1.32 1.54 134.1 -1.55 -0.31 20.6 85 16 10 7 11 2 2 0  MG 2003 D C5P 2005 D DG 15 G DT 16 G DA 17 G DG 18 G DA 19 G COD 101 G DA 10 H DG 11 H 13 1.23 1.24 138.3 -1.74 -0.35 22.3 86 18 10 10 11 2 1 0  MG 2003 D C5P 2005 D DG 15 G DT 16 G DA 17 G DG 18 G DA 19 G COD 101 G 14 1.25 1.22 193.6 -1.70 -0.34 22.3 80 25 23 16 18 6 5 0  C5P 2005 D DG 15 G DT 16 G DA 17 G DG 18 G DA 19 G COD 101 G 15 1.25 1.22 201.4 -1.54 -0.30 20.4 79 23 18 14 14 9 5 0  C5P 2005 D DG 15 G DT 16 G DA 17 G DG 18 G DA 19 G COD 101 G 16 1.13 3.30 19.4 3.57 0.99 0.5 81 0 0 0 9 0 1 0   17 1.21 1.21 15.3 -0.78 -0.38 19.3 81 3 3 1 3 0 0 0   18 1.39 4.47 15.8 -2.62 -0.76 38.6 86 1 3 0 2 0 0 0   19 1.41 4.47 17.9 -1.96 -0.18 28.5 75 2 4 0 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.