PDBsum entry 5d4c Go to PDB code:  Pore analysis for: 5d4c calculated with MOLE 2.0 PDB id 5d4c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   25 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.86 3.82 61.1 -1.95 -0.45 27.3 83 10 6 2 3 1 1 0   2 2.66 3.53 79.7 -1.99 -0.46 28.5 80 12 11 3 6 5 2 0   3 1.30 1.59 85.8 -2.14 -0.41 28.9 76 10 10 2 7 4 3 0   4 1.91 2.17 92.5 -1.91 -0.47 26.9 75 10 13 4 8 4 3 0  DA 18 R 5 2.02 2.45 93.5 -1.90 -0.37 25.6 77 9 11 3 6 2 6 0   6 1.19 1.39 98.6 -1.68 -0.57 17.0 81 12 7 4 3 1 4 0  DC 5 G DT 7 G DC 8 G DC 9 G DG 8 H DA 10 H DG 11 H DC 16 H DA 17 H DC 18 H DG 19 H 7 2.04 3.39 101.3 -1.99 -0.37 26.0 81 11 10 4 7 5 1 0   8 2.31 2.45 106.5 -2.10 -0.53 26.8 79 13 9 3 5 1 3 0  DG 4 G DC 5 G DC 24 H 9 1.39 1.54 118.2 -1.89 -0.47 25.9 81 13 10 5 8 1 6 0  DC 5 G DT 7 G DC 8 G DC 9 G DA 17 H DC 18 H DG 19 H 10 2.54 4.36 126.2 -1.71 -0.49 23.7 78 14 15 4 6 4 6 0  DA 18 R DC 16 S DA 17 S 11 2.39 2.78 135.6 -2.37 -0.46 33.4 81 17 13 5 6 1 3 0  DG 4 R DC 5 R DC 18 S DG 19 S DG 20 S DA 21 S DT 22 S 12 2.14 2.43 139.3 -1.53 -0.36 24.3 82 13 12 4 10 1 4 0  DC 5 G DC 18 H DG 19 H 13 1.34 1.33 145.1 -1.02 -0.27 20.4 82 14 12 5 13 2 5 0  DG 9 S DC 16 S DA 17 S 14 2.52 2.89 155.7 -2.23 -0.52 23.0 80 18 16 12 11 4 7 0  C5P 1604 N CTP 1605 N DA 13 R DG 14 R DA 16 R DG 17 R DA 18 R ATP 101 R 15 1.21 1.21 157.3 -1.88 -0.50 24.1 85 16 14 8 7 0 4 0  DT 7 R DC 8 R DC 9 R DC 16 S DA 17 S 16 1.92 2.22 165.8 -2.36 -0.51 29.4 82 21 16 10 7 5 1 0   17 2.06 3.53 174.8 -2.32 -0.44 27.7 77 16 15 7 9 6 5 0   18 1.92 2.28 175.4 -1.98 -0.41 28.1 83 18 15 8 10 7 3 0   19 2.47 5.45 173.5 -2.42 -0.57 29.5 78 18 17 6 4 2 2 2   20 2.19 2.33 177.3 -2.34 -0.47 24.6 79 22 15 12 12 5 6 0  C5P 1604 N CTP 1605 N DA 13 R DG 14 R DA 16 R DG 17 R DA 18 R ATP 101 R 21 1.18 3.07 176.7 -1.11 -0.28 19.0 85 17 11 12 16 1 4 0  DC 8 R DG 9 S 22 2.34 2.85 185.9 -2.04 -0.46 27.2 78 21 14 6 9 4 6 0  DG 4 R DC 5 R DT 7 R DC 9 R DA 18 R DC 16 S DA 17 S DC 18 S DG 19 S DG 20 S DA 21 S DT 22 S 23 1.38 1.40 181.6 -1.91 -0.53 23.0 83 19 16 10 10 2 5 0  DC 8 R DA 18 R DG 9 S 24 1.27 1.26 185.4 -1.94 -0.51 24.8 82 17 18 9 9 3 4 0  DT 7 R DC 8 R DC 9 R DC 16 S DA 17 S 25 2.59 4.26 210.1 -1.92 -0.47 24.6 78 19 18 5 8 5 9 0  DG 9 S DC 16 S DA 17 S 26 1.88 1.88 211.7 -2.02 -0.48 25.1 79 24 19 11 12 4 8 0  DC 5 G DT 7 G DC 8 G DC 9 G DA 18 G DG 11 H DC 16 H DA 17 H DC 18 H DG 19 H 27 1.23 1.24 219.6 -2.14 -0.53 25.0 79 30 26 14 12 4 7 0  DA 18 G DA 10 H 28 1.74 2.81 263.6 -2.11 -0.53 25.2 83 32 21 18 11 6 4 0  C5P 2005 D CTP 2006 D DA 13 G DG 14 G DA 16 G DG 17 G DA 18 G ATP 101 G 29 2.40 2.82 267.8 -2.05 -0.46 26.5 77 26 17 7 11 5 8 0  DG 4 R DC 5 R DT 7 R DC 9 R DG 9 S DC 16 S DA 17 S DC 18 S DG 19 S DG 20 S DA 21 S DT 22 S 30 1.81 1.77 278.2 -2.02 -0.49 26.3 82 31 18 10 11 5 6 0  DC 5 G DT 7 G DC 8 G DC 9 G DA 18 G DG 11 H DC 16 H DA 17 H DC 18 H DG 19 H Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.