PDBsum entry 5d3m Go to PDB code:  Pore analysis for: 5d3m calculated with MOLE 2.0 PDB id 5d3m Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   28 pores, coloured by radius 21 pores, coloured by radius 21 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.50 3.83 28.6 2.18 1.06 0.8 77 0 0 1 8 4 0 0   2 3.69 5.19 30.7 -1.99 -0.53 23.3 78 4 2 2 1 1 2 0  ANP 301 A 3 1.09 1.71 35.5 -1.39 -0.40 19.9 78 4 3 1 3 2 0 0   4 2.15 2.40 58.4 1.18 0.69 7.0 71 3 0 2 12 4 0 0   5 1.38 1.73 85.8 -0.74 -0.02 16.5 76 8 3 3 12 6 3 0   6 1.31 1.29 89.3 1.64 0.80 8.0 76 3 1 1 15 9 1 0   7 1.55 1.55 115.2 -1.22 -0.26 19.0 82 10 4 8 8 7 3 0  ANP 301 B 8 1.93 2.65 113.4 -1.15 -0.25 14.9 79 6 6 9 7 7 2 0  ANP 301 A ANP 301 B 9 1.37 1.34 114.5 -0.34 0.13 14.7 75 10 3 7 17 7 3 0   10 1.21 1.72 116.3 -1.08 -0.33 15.2 81 7 9 11 10 5 2 1  ANP 301 A ANP 301 B 11 1.54 1.59 120.4 -1.43 -0.36 20.1 81 14 8 10 7 5 1 0  ANP 301 E ANP 301 F 12 1.50 2.28 128.2 -0.77 -0.15 17.3 78 9 11 7 14 6 3 0  ANP 301 B 13 2.05 4.50 132.5 -0.51 0.02 13.8 78 8 8 11 15 8 2 0  ANP 301 A ANP 301 B 14 1.85 3.14 133.3 -0.43 -0.03 14.7 81 9 7 11 19 6 0 0  ANP 301 E ANP 301 F 15 1.16 1.82 140.5 -1.35 -0.48 19.1 83 11 9 12 8 5 2 0  ANP 301 B 16 1.53 2.76 143.5 -1.18 -0.21 16.5 79 11 7 12 12 9 2 0  ANP 301 E ANP 301 F 17 1.43 1.57 148.0 -1.03 -0.18 21.9 79 7 13 6 13 2 4 0   18 1.14 1.16 181.8 -2.22 -0.57 27.0 81 7 15 8 5 2 4 0   19 1.11 1.14 208.6 -0.97 -0.30 19.1 82 8 16 7 14 4 2 0   20 1.12 1.15 242.2 -0.94 -0.29 18.1 83 10 17 12 20 5 2 0  ANP 301 F 21 1.18 3.47 271.7 -0.15 -0.07 12.3 82 14 13 18 37 13 3 0  ANP 301 B ANP 301 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.