PDBsum entry 5d1m Go to PDB code:  Pore analysis for: 5d1m calculated with MOLE 2.0 PDB id 5d1m Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.07 3.01 26.7 -1.60 -0.38 11.3 82 1 1 4 3 1 2 0   2 1.89 2.15 34.8 -2.04 -0.45 20.8 73 3 1 3 3 1 1 0   3 1.55 1.75 39.7 -2.19 -0.45 22.4 76 4 1 3 2 2 1 0   4 2.28 2.27 45.2 -1.61 -0.40 13.9 82 4 1 6 3 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.