PDBsum entry 5d0u Go to PDB code:  Pore analysis for: 5d0u calculated with MOLE 2.0 PDB id 5d0u Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.23 2.23 30.7 -1.90 -0.52 25.9 82 5 3 2 2 1 0 0   2 1.17 2.08 31.5 -1.89 -0.72 18.9 82 4 3 3 2 0 1 0   3 2.10 2.21 53.5 -1.77 -0.49 23.4 82 9 4 3 1 0 1 0   4 1.29 1.61 54.1 -1.07 -0.40 16.9 82 6 3 3 3 0 1 0   5 1.61 2.33 55.2 -2.75 -0.58 31.1 80 6 7 6 4 3 0 0  DMS 805 A 6 1.60 2.32 58.3 -2.48 -0.60 30.3 79 8 7 5 3 3 1 0  DMS 805 A 7 1.60 2.33 58.8 -1.81 -0.45 25.6 78 5 6 4 6 3 1 0  DMS 805 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.