PDBsum entry 5d0m Go to PDB code:  Tunnel analysis for: 5d0m calculated with MOLE 2.0 PDB id 5d0m Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.19 18.1 -1.13 -0.48 19.5 81 3 1 1 3 0 0 0   2 2.13 3.06 19.5 0.72 0.29 12.7 84 2 1 2 6 0 0 0   3 1.67 2.37 24.9 1.30 0.41 10.0 87 2 1 2 6 0 0 0  PO4 201 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.