PDBsum entry 5d0k Go to PDB code:  Pore analysis for: 5d0k calculated with MOLE 2.0 PDB id 5d0k Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   15 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.88 2.24 25.2 -1.66 -0.36 21.9 73 4 2 2 1 1 2 0   2 2.50 3.26 32.5 -1.40 -0.41 20.2 86 3 2 4 2 1 0 0   3 1.89 2.24 43.1 -1.53 -0.48 15.8 80 3 4 4 4 0 2 0   4 1.77 2.48 70.1 -1.51 -0.48 15.6 82 8 3 6 4 2 2 0   5 2.04 3.69 106.1 -1.68 -0.52 21.9 85 6 6 5 5 0 2 0   6 1.29 2.93 110.5 -1.03 -0.33 18.3 83 7 5 5 7 1 1 0   7 2.14 2.14 116.2 -2.06 -0.59 24.2 86 8 7 8 3 1 2 0   8 1.98 2.39 121.2 -2.13 -0.61 23.2 83 8 9 7 4 0 4 0   9 1.78 2.88 126.9 -1.50 -0.52 20.5 85 9 8 7 6 0 1 0   10 1.28 1.43 157.8 -1.99 -0.49 24.2 83 11 7 9 7 1 2 1   11 1.66 1.79 164.5 -0.70 -0.31 12.7 89 6 8 16 13 1 3 0   12 1.71 1.79 168.9 -0.71 -0.29 12.2 87 7 6 13 15 1 4 0   13 1.65 1.80 188.4 -0.97 -0.39 14.1 87 7 10 12 13 0 4 0   14 1.37 1.49 190.2 -0.61 -0.22 14.8 84 8 4 9 18 0 4 0   15 1.67 1.67 233.2 -1.10 -0.28 18.1 85 14 5 12 10 3 0 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.