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PDBsum entry 5cz8

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5cz8 calculated with MOLE 2.0 PDB id
5cz8
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.35 1.49 85.7 -2.07 -0.38 20.6 77 8 6 7 5 8 2 0  
2 1.75 2.23 104.5 -2.52 -0.47 29.0 77 13 9 5 3 4 2 0  
3 1.61 1.85 106.6 -1.76 -0.30 20.0 77 12 6 7 6 8 2 1  MG 302 G
4 1.43 1.51 110.8 -1.10 -0.25 15.8 76 14 5 7 9 7 2 1  MG 302 G
5 1.45 1.49 112.4 -1.71 -0.39 23.4 76 14 8 5 6 4 2 0  
6 1.90 2.94 115.2 -2.12 -0.32 25.3 79 14 7 8 6 8 1 0  
7 1.77 2.11 153.2 -1.68 -0.30 19.9 76 17 7 11 9 11 3 0  
8 1.27 1.47 156.8 -2.07 -0.34 24.1 83 13 7 11 6 9 1 1  3BV 301 V MES 302 V 3BV 201 b
9 1.83 1.97 162.2 -2.12 -0.39 24.6 80 15 9 8 5 10 1 1  3BV 301 V MES 302 V 3BV 201 b
10 1.43 1.53 161.4 -1.99 -0.42 21.7 79 14 9 11 6 10 1 0  
11 1.52 2.73 163.3 -2.08 -0.35 23.6 81 13 10 11 8 8 2 1  3BV 301 V MES 302 V 3BV 201 b
12 1.58 1.76 167.0 -2.08 -0.39 24.4 82 15 12 10 7 10 1 1  3BV 301 V MES 302 V 3BV 201 b
13 1.57 2.38 167.8 -1.64 -0.32 19.1 80 15 8 12 9 10 1 3  MG 302 G 3BV 301 V MES 302 V 3BV 201 b
14 1.75 1.92 173.2 -1.68 -0.27 21.2 80 14 13 10 9 11 2 1  3BV 301 V MES 302 V 3BV 201 b
15 1.79 2.07 174.6 -1.89 -0.36 21.1 80 13 9 12 7 11 2 2  3BV 301 V MES 302 V 3BV 201 b
16 1.79 1.99 175.0 -1.73 -0.33 21.7 83 15 10 11 9 8 1 2  3BV 301 V MES 302 V 3BV 201 b
17 1.49 1.58 179.5 -1.38 -0.30 17.7 79 15 8 11 10 9 2 2  3BV 301 V MES 302 V 3BV 201 b
18 1.19 1.20 177.8 -1.38 -0.23 19.0 79 14 7 11 10 13 3 1  3BV 301 V MES 302 V 3BV 201 b
19 1.78 2.24 184.2 -2.12 -0.44 24.2 81 17 13 11 7 7 2 2  3BV 301 V MES 302 V 3BV 201 b
20 1.76 2.02 197.6 -1.53 -0.26 19.5 80 17 10 13 11 11 3 1  3BV 301 V MES 302 V 3BV 201 b
21 1.28 1.50 195.5 -2.38 -0.40 24.1 80 17 4 15 3 12 1 2  
22 1.28 1.53 199.8 -1.84 -0.34 20.6 80 19 3 14 6 10 1 2  
23 1.95 2.11 200.9 -2.47 -0.46 24.9 78 19 7 12 2 13 1 2  
24 1.41 2.58 202.0 -2.38 -0.41 24.0 79 17 8 15 5 11 2 2  
25 1.37 1.71 205.2 -1.89 -0.39 21.0 78 21 6 11 5 11 1 2  
26 1.68 1.95 212.7 -1.45 -0.26 18.4 79 18 10 15 12 11 3 2  3BV 301 V MES 302 V 3BV 201 b
27 1.63 1.82 211.9 -1.92 -0.32 21.4 78 18 10 14 5 14 2 2  
28 1.28 1.64 216.2 -1.57 -0.30 18.7 78 20 9 13 7 12 2 2  
29 1.77 1.94 236.3 -1.83 -0.32 20.1 78 21 7 17 8 14 3 2  
30 1.64 1.65 240.6 -1.46 -0.28 17.5 78 23 6 16 10 12 3 2  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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