spacer
spacer

PDBsum entry 5cz7

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5cz7 calculated with MOLE 2.0 PDB id
5cz7
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.38 1.44 74.1 -1.11 -0.24 16.6 76 5 9 6 6 5 4 0  
2 1.75 1.92 84.1 -2.80 -0.55 31.1 83 12 9 5 1 3 0 0  
3 1.54 2.18 107.2 -1.94 -0.38 22.5 78 18 7 6 4 7 1 1  
4 1.69 2.24 109.8 -2.03 -0.27 25.2 78 14 9 5 8 7 2 0  
5 1.64 1.92 110.8 -1.81 -0.37 20.6 80 14 7 9 5 6 1 1  
6 1.86 2.94 114.2 -2.44 -0.41 31.0 80 17 9 5 6 5 0 0  
7 1.66 1.83 118.1 -1.52 -0.26 22.2 83 15 7 6 9 5 0 0  
8 1.86 2.88 122.0 -2.74 -0.56 29.7 78 17 10 5 1 4 1 0  
9 1.53 1.76 123.2 -1.85 -0.30 24.4 78 15 9 6 9 9 2 1  
10 1.76 1.92 123.2 -2.66 -0.59 28.8 80 14 10 6 2 3 1 0  
11 1.58 1.71 126.8 -2.22 -0.42 23.8 84 19 7 11 5 5 1 0  
12 1.35 1.53 140.6 -2.51 -0.51 25.0 84 15 9 13 3 5 0 0  
13 1.65 1.68 162.2 -1.52 -0.26 17.1 78 17 9 12 9 9 3 0  
14 1.23 1.21 169.9 -1.62 -0.42 13.9 82 14 8 17 6 10 0 0  
15 1.22 1.22 179.0 -1.49 -0.35 15.4 80 15 9 16 8 12 0 0  
16 1.97 2.82 187.1 -2.81 -0.60 27.8 83 23 8 10 4 4 0 0  
17 1.72 1.97 190.7 -2.65 -0.59 25.4 85 20 8 13 5 3 0 0  
18 1.65 2.09 191.0 -2.34 -0.47 22.2 82 21 8 10 6 5 2 0  
19 1.68 3.13 194.6 -2.23 -0.48 20.4 84 18 8 14 8 4 2 0  
20 1.70 2.42 199.6 -1.85 -0.34 20.8 81 20 8 13 9 9 1 1  
21 1.73 1.98 208.7 -2.23 -0.46 22.5 84 19 10 14 6 7 0 0  
22 1.62 1.85 207.8 -2.09 -0.44 21.5 83 25 7 9 7 7 0 0  
23 1.83 3.67 209.6 -2.37 -0.45 24.8 81 23 10 10 5 9 0 0  
24 1.62 1.81 211.4 -2.01 -0.44 20.3 85 22 7 13 8 6 0 0  
25 1.77 2.90 224.3 -2.43 -0.50 25.9 82 22 12 12 7 6 1 0  
26 1.68 4.29 227.0 -2.08 -0.35 23.2 83 26 8 16 8 10 1 0  
27 1.72 1.73 234.6 -1.61 -0.30 17.1 80 21 9 16 9 11 3 0  
28 1.35 1.54 235.4 -2.26 -0.40 23.9 83 21 10 17 5 10 0 0  
29 1.52 1.52 238.2 -1.56 -0.32 15.9 81 18 9 20 10 10 3 0  
30 1.70 1.67 245.3 -1.42 -0.22 16.7 79 20 10 16 12 13 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer