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PDBsum entry 5cz5

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5cz5 calculated with MOLE 2.0 PDB id
5cz5
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.96 2.15 95.5 -2.40 -0.42 25.7 75 13 7 4 2 8 1 0  
2 1.29 1.68 99.0 -1.37 -0.23 18.4 76 11 4 5 7 7 2 0  
3 1.61 2.56 107.7 -1.78 -0.31 20.5 77 13 6 8 6 8 2 1  MG 302 G
4 1.66 1.85 129.1 -1.87 -0.23 21.5 76 14 8 9 6 11 2 0  
5 1.23 1.67 137.0 -2.42 -0.44 28.0 80 13 11 6 2 5 0 0  
6 1.31 1.63 142.6 -2.39 -0.41 28.9 81 17 11 5 5 6 1 0  
7 1.31 1.65 145.9 -2.25 -0.42 27.8 82 17 13 6 6 6 1 0  
8 1.47 1.63 143.4 -2.24 -0.42 23.7 80 16 8 10 5 7 1 0  
9 1.87 2.04 154.2 -1.60 -0.42 17.9 86 12 7 11 9 5 2 0  3BV 301 K
10 1.83 1.96 156.8 -1.62 -0.27 19.3 76 17 7 10 9 10 3 0  
11 1.34 1.64 157.4 -2.18 -0.42 25.4 81 16 9 7 7 8 1 0  
12 1.39 1.66 158.3 -1.09 -0.36 15.3 85 14 5 11 11 4 2 0  3BV 301 K
13 1.45 1.60 167.8 -2.03 -0.34 25.5 79 21 11 7 10 11 2 1  
14 1.56 1.55 184.2 -2.42 -0.49 29.2 81 21 13 7 6 5 2 0  
15 1.49 2.57 191.8 -2.11 -0.39 20.4 80 16 6 13 7 10 2 1  
16 2.26 3.34 193.7 -2.41 -0.44 22.6 82 15 5 12 5 9 1 0  
17 1.34 1.28 216.1 -2.16 -0.45 24.7 83 22 14 14 12 7 1 0  
18 1.87 2.09 201.2 -2.56 -0.48 24.0 80 20 7 10 3 10 1 0  
19 1.67 4.21 204.5 -2.46 -0.46 24.1 82 20 9 12 4 9 1 0  
20 1.36 1.60 204.3 -2.51 -0.48 23.9 83 20 6 15 4 8 1 0  
21 1.70 2.56 210.0 -2.63 -0.50 25.8 81 20 10 12 5 7 2 0  
22 1.56 1.54 213.9 -1.80 -0.40 21.5 86 19 11 12 11 7 2 0  3BV 301 K
23 1.36 1.60 208.4 -2.05 -0.42 21.3 83 22 4 15 7 7 1 0  
24 1.44 1.63 247.0 -1.97 -0.44 23.8 84 22 14 12 9 8 1 0  
25 1.37 1.41 245.1 -2.27 -0.45 21.6 83 22 10 19 11 9 1 0  
26 1.53 1.56 248.4 -2.14 -0.41 23.1 83 25 10 14 10 10 2 1  MG 302 G
27 1.53 1.56 256.7 -2.44 -0.48 25.5 83 26 11 11 6 10 1 0  
28 1.53 1.57 261.5 -1.90 -0.39 21.7 82 25 8 13 11 9 2 0  
29 1.51 1.52 270.0 -2.03 -0.36 22.9 82 25 14 14 9 13 2 0  
30 1.55 1.56 296.0 -1.94 -0.35 21.9 81 28 11 17 12 13 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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