PDBsum entry 5cox

Pore analysis for: 5cox calculated with

MOLE 2.0

PDB id

5cox

Pores calculated on whole structure

Pores calculated excluding ligands

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visualization
with HETATM:

without HETATM:

9 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.82

3.02

26.2

-1.41

-0.17

13.1

74

3

0

4

1

2

1

0

2

2.75

2.99

32.6

-1.09

-0.07

11.9

79

4

0

4

1

2

0

0

3

2.03

2.07

46.6

-1.10

-0.46

9.6

74

3

3

6

2

2

2

2

4

2.07

2.08

50.5

-1.54

-0.38

14.1

72

3

4

6

2

4

2

2

5

2.65

4.72

50.7

-2.95

-0.54

36.3

80

11

5

3

2

0

1

0

NAG 671 C

6

2.02

2.06

55.5

-1.55

-0.46

16.9

76

5

5

6

2

1

2

2

7

2.07

2.11

56.9

-1.88

-0.41

19.4

74

5

6

6

2

3

2

2

8

2.71

4.79

63.1

-1.93

-0.36

27.1

84

11

5

6

4

1

1

0

9

1.17

1.32

68.0

-1.07

-0.50

9.5

81

7

3

8

4

2

2

0

NAG 671 A

10

1.25

3.47

91.0

0.08

-0.03

7.6

81

5

3

10

12

9

1

0

NAG 671 A

11

1.92

2.24

101.5

-1.74

-0.51

16.4

78

5

5

7

3

4

2

0

NAG 661 B

12

1.91

2.24

109.9

-2.02

-0.52

22.5

79

7

6

7

2

3

1

0

NAG 661 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.