PDBsum entry 5cer Go to PDB code:  Tunnel analysis for: 5cer calculated with MOLE 2.0 PDB id 5cer Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.22 38.5 -0.93 -0.39 18.4 88 4 5 3 9 0 0 0   2 1.23 1.22 42.8 -1.96 -0.42 27.2 81 5 8 3 6 1 0 0   3 1.24 1.31 57.2 -1.32 -0.62 18.7 82 5 10 3 6 1 0 0   4 1.23 1.26 60.3 -1.51 -0.29 25.5 81 7 7 4 7 1 0 0   5 1.16 1.50 17.6 0.92 0.42 3.4 83 0 1 1 4 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.