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PDBsum entry 5cdw
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Signaling protein
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PDB id
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5cdw
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PDB id:
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| Name: |
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Signaling protein
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Title:
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Crystal structure analysis of a mutant grb2 sh2 domain (w121g) with a pyvnv peptide
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Structure:
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Growth factor receptor-bound protein 2. Chain: a, e, b, c, g, h, k, l, o, p, u, v, y, z, c, d. Synonym: adapter protein grb2,protein ash,sh2/sh3 adapter grb2. Engineered: yes. Mutation: yes. Ser-ptr-val-asn-val-gln. Chain: d, m, s, a, f, j, n, r, t, x, b, f, h, j, i, q. Engineered: yes
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Source:
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Homo sapiens. Human. Organism_taxid: 9606. Gene: grb2, ash. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Organism_taxid: 9606
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Resolution:
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2.60Å
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R-factor:
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0.239
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R-free:
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0.294
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Authors:
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D.Papaioannou,S.Geibel,M.Kunze,C.Kay,G.Waksman
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Key ref:
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D.Papaioannou
et al.
(2016).
Structural and biophysical investigation of the interaction of a mutant Grb2 SH2 domain (W121G) with its cognate phosphopeptide.
Protein Sci,
25,
627-637.
PubMed id:
DOI:
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Date:
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05-Jul-15
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Release date:
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25-May-16
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PROCHECK
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Headers
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References
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P62993
(GRB2_HUMAN) -
Growth factor receptor-bound protein 2 from Homo sapiens
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Seq:
Struc:
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217 a.a.
98 a.a.*
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Key: |
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PfamA domain |
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Secondary structure |
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CATH domain |
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*
PDB and UniProt seqs differ
at 1 residue position (black
cross)
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DOI no:
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Protein Sci
25:627-637
(2016)
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PubMed id:
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Structural and biophysical investigation of the interaction of a mutant Grb2 SH2 domain (W121G) with its cognate phosphopeptide.
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D.Papaioannou,
S.Geibel,
M.B.Kunze,
C.W.Kay,
G.Waksman.
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ABSTRACT
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The adaptor protein Grb2 is a key element of mitogenetically important signaling
pathways. With its SH2 domain it binds to upstream targets while its SH3 domains
bind to downstream proteins thereby relaying signals from the cell membranes to
the nucleus. The Grb2 SH2 domain binds to its targets by recognizing a
phosphotyrosine (pY) in a pYxNx peptide motif, requiring an Asn at the +2
position C-terminal to the pY with the residue either side of this Asn being
hydrophobic. Structural analysis of the Grb2 SH2 domain in complex with its
cognate peptide has shown that the peptide adopts a unique β-turn conformation,
unlike the extended conformation that phosphopeptides adopt when bound to other
SH2 domains. TrpEF1 (W121) is believed to force the peptide into this unusual
conformation conferring this unique specificity to the Grb2 SH2 domain. Using
X-ray crystallography, electron paramagnetic resonance (EPR) spectroscopy, and
isothermal titration calorimetry (ITC), we describe here a series of experiments
that explore the role of TrpEF1 in determining the specificity of the Grb2 SH2
domain. Our results demonstrate that the ligand does not adopt a pre-organized
structure before binding to the SH2 domain, rather it is the interaction between
the two that imposes the hairpin loop to the peptide. Furthermore, we find that
the peptide adopts a similar structure when bound to both the wild-type Grb2 SH2
domain and a TrpEF1Gly mutant. This suggests that TrpEF1 is not the determining
factor for the conformation of the phosphopeptide.
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Links
