PDBsum entry 5c8n Go to PDB code:  Tunnel analysis for: 5c8n calculated with MOLE 2.0 PDB id 5c8n Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.33 15.9 -1.14 -0.29 13.1 73 0 3 1 5 1 2 0   2 1.70 1.78 17.8 1.02 0.29 4.7 81 1 1 1 4 1 0 1  4YX 1102 A 3 1.33 1.33 19.4 -1.29 -0.40 13.4 70 2 1 1 3 1 2 0   4 1.71 2.05 23.0 1.08 0.08 7.0 76 1 2 0 6 0 0 2  4YX 1102 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.