PDBsum entry 5c7j Go to PDB code:  Pore analysis for: 5c7j calculated with MOLE 2.0 PDB id 5c7j Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 2.38 25.2 -0.03 0.03 9.7 75 3 1 2 3 2 0 0   2 1.82 2.04 27.0 1.57 0.53 5.2 77 2 1 0 8 1 1 0   3 1.11 1.11 29.9 0.30 0.27 18.9 83 3 3 1 6 1 0 0   4 1.92 1.99 46.1 0.98 0.21 6.5 79 1 3 2 9 1 1 0   5 1.91 2.00 45.7 1.05 0.23 6.8 76 1 3 2 9 1 1 0   6 1.53 2.83 46.8 0.19 0.06 17.9 79 5 4 2 9 0 0 0   7 1.51 2.72 48.7 0.13 -0.08 16.6 82 5 4 3 9 0 0 0   8 1.52 2.83 70.4 -0.14 -0.03 21.0 78 5 7 1 9 0 0 0   9 1.29 2.37 124.3 -1.67 -0.32 27.8 79 8 6 3 3 1 0 0   10 1.21 1.37 37.0 -1.40 -0.14 22.7 68 3 2 2 4 5 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.