 |
PDBsum entry 5c6p
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 5c6p calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5c6p
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
10 pores,
coloured by radius |
|
8 pores,
coloured by radius
|
8 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.19 |
1.20 |
30.2 |
0.59 |
-0.03 |
5.4 |
93 |
|
1 |
0 |
3 |
10 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
1.14 |
1.20 |
39.8 |
1.08 |
0.33 |
5.6 |
71 |
0 |
2 |
2 |
8 |
7 |
0 |
0 |
4YH 601 A
|
|
3 |
 |
1.44 |
4.48 |
49.3 |
1.31 |
0.48 |
2.4 |
81 |
0 |
1 |
4 |
11 |
7 |
0 |
0 |
|
|
4 |
 |
1.48 |
2.00 |
56.7 |
1.70 |
0.28 |
2.8 |
87 |
1 |
0 |
3 |
13 |
1 |
0 |
0 |
|
|
5 |
 |
1.16 |
1.17 |
65.8 |
1.96 |
0.39 |
1.0 |
83 |
0 |
0 |
4 |
13 |
2 |
0 |
0 |
|
|
6 |
 |
1.20 |
1.22 |
28.0 |
2.31 |
0.84 |
1.2 |
87 |
0 |
0 |
0 |
9 |
2 |
0 |
0 |
|
|
7 |
 |
1.24 |
1.25 |
28.0 |
1.11 |
0.67 |
1.6 |
81 |
0 |
0 |
2 |
8 |
3 |
0 |
0 |
|
 |
8 |
 |
1.29 |
2.10 |
28.8 |
1.24 |
0.78 |
1.3 |
87 |
0 |
0 |
4 |
7 |
2 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program