PDBsum entry 5c4a Go to PDB code:  Pore analysis for: 5c4a calculated with MOLE 2.0 PDB id 5c4a Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   27 pores, coloured by radius 27 pores, coloured by radius 27 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.52 3.87 37.6 -2.67 -0.58 29.6 86 5 4 3 1 1 2 0   2 2.64 2.81 46.2 -2.28 -0.54 25.3 80 6 3 4 3 2 1 0  U 2 R DG 26 U DA 27 U DA 28 U 3 2.48 3.47 56.0 -1.81 -0.48 25.3 88 5 5 6 6 0 0 0   4 2.67 2.83 60.1 -2.09 -0.68 24.9 85 5 4 4 2 0 2 0  U 2 R C 3 R G 4 R A 5 R G 6 R A 7 R DA 15 U DG 17 U DC 23 U DT 24 U DC 25 U 5 4.18 4.18 60.9 -2.54 -0.45 28.3 82 8 3 5 3 3 2 0  U 2 R DG 26 U DA 27 U DA 28 U 6 2.99 2.99 74.8 -2.44 -0.57 28.4 85 7 4 5 2 1 3 0  U 2 R C 3 R G 4 R A 5 R G 6 R A 7 R DA 15 U DG 17 U DC 23 U DT 24 U DC 25 U 7 1.18 1.36 80.9 -1.73 -0.48 24.7 86 9 8 4 7 2 1 0   8 3.40 3.57 83.9 -1.17 -0.50 12.6 82 7 3 6 6 0 2 0  DT 24 S DG 25 S DT 26 S DA 27 S DC 28 S DC 4 U DC 5 U DG 6 U DA 7 U DT 8 U DA 9 U DA 10 U DG 11 U DT 12 U DC 14 U 9 2.21 3.68 88.6 -2.47 -0.77 23.9 88 7 6 10 2 0 2 0  DT 24 S DG 25 S DT 26 S DC 28 S DT 8 U DA 9 U DA 10 U DG 11 U DT 12 U DC 14 U 10 2.43 3.95 90.4 -1.65 -0.57 18.1 85 5 6 9 6 1 2 0  DC 4 U DC 5 U DG 6 U DA 7 U DT 8 U 11 2.03 2.35 91.0 -1.18 -0.29 19.7 82 9 5 5 7 1 2 0   12 3.40 3.67 92.7 -1.32 -0.40 12.9 86 4 6 10 6 3 3 0   13 1.47 1.60 101.2 -2.49 -0.36 30.8 76 11 6 5 3 2 1 0   14 3.51 3.70 105.5 -1.46 -0.54 17.5 85 10 10 8 13 0 2 0  DT 26 S DA 27 S DC 28 S DC 4 U DC 5 U DG 6 U DA 7 U DT 8 U DA 9 U DA 10 U 15 2.71 2.81 109.6 -1.69 -0.56 17.9 86 13 7 11 8 0 1 0  MG 1804 A DA 27 S DC 28 S DC 4 U DC 5 U DG 6 U DA 7 U 16 3.37 3.79 113.3 -2.00 -0.48 20.4 85 7 8 12 3 5 4 0   17 2.02 2.36 112.5 -1.90 -0.50 24.8 87 15 10 7 11 0 1 0  DT 24 S 18 2.73 3.00 115.2 -2.05 -0.67 20.2 85 15 6 12 4 0 1 0  MG 1804 A DT 24 S DG 25 S DT 26 S DA 27 S DC 28 S DT 8 U DA 9 U DA 10 U DG 11 U DT 12 U DC 14 U 19 2.51 3.27 122.5 -1.39 -0.46 21.6 83 13 8 8 12 1 1 0  DT 24 S DC 14 U 20 2.60 4.01 126.4 -2.21 -0.70 22.1 87 14 9 15 7 1 1 0  MG 1804 A DA 27 S DC 28 S DA 7 U DT 8 U 21 2.73 2.94 136.8 -2.00 -0.64 21.8 87 18 13 14 11 0 1 0  MG 1804 A DT 26 S DA 27 S DC 28 S DT 8 U DA 9 U D A 10 U 22 1.94 2.39 168.7 -2.01 -0.53 23.9 80 20 10 10 11 3 0 0  DT 24 S DC 14 U 23 2.02 2.39 168.6 -0.93 -0.25 15.5 84 13 5 9 9 4 3 0  DA 28 U 24 1.35 2.76 187.1 -2.08 -0.58 28.4 84 18 18 6 11 0 1 0   25 2.81 3.26 200.1 -1.11 -0.39 17.4 84 17 8 12 14 4 2 0  DT 24 S DC 14 U DA 28 U 26 1.26 3.56 281.9 -2.03 -0.47 25.0 79 27 23 15 15 6 0 0   27 1.18 1.19 287.3 -0.58 -0.11 16.7 82 19 7 11 20 6 2 2  DT 12 U DA 13 U DA 28 U Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.