PDBsum entry 5buu Go to PDB code:  Tunnel analysis for: 5buu calculated with MOLE 2.0 PDB id 5buu Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.83 2.02 18.7 -2.74 -0.62 34.3 78 4 1 2 1 1 0 0  4V6 801 A 2 1.98 2.05 23.9 -0.72 -0.60 11.7 87 2 2 4 2 0 0 0  4V6 801 A EDO 806 B 3 1.71 1.88 26.6 -1.23 -0.57 22.5 87 4 3 2 3 0 0 0  4V6 801 A SO4 803 A 4 1.94 2.94 27.7 -1.47 -0.73 10.1 86 3 2 6 1 1 1 0  4V6 801 A 4V6 801 B EDO 808 B 5 1.71 1.87 30.2 -1.53 -0.55 25.7 86 6 2 1 4 0 0 0  4V6 801 A 6 1.36 1.47 22.0 -1.29 -0.63 12.2 86 1 4 2 2 0 0 0  EDO 807 B 7 1.24 1.40 22.1 -0.97 -0.23 11.8 80 3 1 1 1 1 0 0  GLU 802 B 8 1.23 1.37 25.5 -0.50 -0.14 8.2 82 2 2 1 3 1 0 0  GLU 802 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.