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PDBsum entry 5bmm
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Tunnel analysis for: 5bmm calculated with  MOLE 2.0
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PDB id
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5bmm
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.73 |
1.73 |
16.9 |
-0.65 |
-0.49 |
15.2 |
88 |
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1 |
2 |
2 |
2 |
0 |
0 |
0 |
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ALC 2 D PFF 3 D PPN 4 D ORN 5 D
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2 |
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1.73 |
1.73 |
22.6 |
-0.28 |
-0.22 |
11.0 |
70 |
2 |
1 |
1 |
3 |
1 |
1 |
1 |
FUM 1 D ALC 2 D PFF 3 D PPN 4 D ORN 5 D
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3 |
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1.33 |
1.54 |
23.5 |
0.65 |
0.23 |
9.9 |
75 |
2 |
1 |
1 |
5 |
1 |
0 |
0 |
PFF 3 D
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4 |
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1.41 |
1.51 |
21.2 |
-0.71 |
-0.14 |
10.3 |
77 |
3 |
1 |
1 |
1 |
4 |
1 |
0 |
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5 |
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1.27 |
1.27 |
22.0 |
0.05 |
-0.09 |
6.5 |
87 |
2 |
1 |
2 |
2 |
3 |
0 |
0 |
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6 |
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1.36 |
1.61 |
19.8 |
-0.48 |
0.02 |
10.2 |
77 |
3 |
1 |
1 |
1 |
4 |
1 |
0 |
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7 |
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1.20 |
1.20 |
20.1 |
-0.36 |
-0.13 |
8.3 |
77 |
2 |
2 |
1 |
1 |
4 |
1 |
0 |
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8 |
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1.29 |
1.93 |
15.0 |
-0.01 |
-0.29 |
4.2 |
79 |
1 |
0 |
1 |
3 |
1 |
0 |
0 |
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9 |
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1.44 |
1.51 |
15.0 |
0.22 |
0.19 |
13.0 |
73 |
1 |
0 |
0 |
3 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program